PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03670.10 | ||||||||
Common Name | JCGZ_14054, LOC105642643, WRKY22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 29016.6 Da PI: 9.2916 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.5 | 3.3e-34 | 101 | 158 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+ Jcr4S03670.10 101 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSYSDPSIVVTTYEGQHTHP 158 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 2.6E-104 | 3 | 260 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 3.4E-35 | 85 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-30 | 92 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.214 | 95 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-40 | 100 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-27 | 101 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MFDVLPLPST VPLPTVSINP VKKMESPPEV LNQPATPNSS SISSASSEAL NDEPVKPVDI 60 NNEEEEQQKT AKELKPKKTN QKRQREPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP 120 RSYYRCTSAS CNVKKRVERS YSDPSIVVTT YEGQHTHPSP VMPRPSFVGA GINSESSFSP 180 NTGFGMPMQR RLSLYQQQQQ QSFVHSFASP LGLGYNGANA NNTNASFVNE KRFCTPPSVS 240 GLVQDHGLLQ DIVPSHMLKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 90 | 161 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 90 | 161 | 7 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485274 | 0.0 | KC485274.1 Jatropha curcas WRKY transcription factor 22 (WRKY22) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082928.1 | 0.0 | probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 1e-67 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | S5CKF1 | 0.0 | S5CKF1_JATCU; WRKY transcription factor | ||||
STRING | cassava4.1_012748m | 1e-116 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 8e-67 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Entrez Gene | 105642643 |