PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03667.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 515aa    MW: 58741.9 Da    PI: 4.5333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03667.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS130.22.3e-401495143374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL +  ea++++++ la+ +++ lse ++  g+p+ Rla+ f    +++ ++        l  +++     ++  +a+k+f++++ + +fsh++a
  Jcr4S03667.10 149 HLLKAYGEAIENEQTDLANVIMTCLSEKVTLCGEPLLRLAFNFSSQ-QNQHQK-------YL--KQE---AYKNFETAFKAFYQIFLYGRFSHFAA 231
                    7888999***********************************9753.222222.......22..222...3567778999**************** PP

           GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.vakrledl 189
                    N+ I++a+  + e +Hi+Dfdi++G+QWp+Ll+ La       ++++T+++ ++ +      + ee ++rL ++A+ lg++++ + + +++ ++++
  Jcr4S03667.10 232 NSVIVKAMPADaEIIHIVDFDIGEGVQWPPLLEVLAMLG---KEVKLTTIKWEKCDqtpLMWNFEEAKRRLVDYAKDLGLRLKMEEIgIEELVNEI 324
                    ********9886788*********************963...57*******98877656667889*********************9666677888 PP

           GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklp 276
                    + ++ r +++E l+ n+++ l ++   +v +++  +e+L++ k+l      +  v+++ + + ++   +s  F   f   +  y al++s+e ++p
  Jcr4S03667.10 325 KKRRKRGSTKEWLVFNCMVGLPHMG--RVRSRKLVKEFLSVAKELlmgsnnNKGVITFGDGDfCESskTSIGFGSFFEGNMVKYQALLESIEYNFP 418
                    888888888***************9..777777889*******99777665567999**999644422556899999999**************** PP

           GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvs 369
                     +  + r+ +E  ++g+ +++ v  +  +  e +e        ++ + F+  ++s + +++a+ ++++ + + g rv  e +++++l Wk+ pL+ 
  Jcr4S03667.10 419 IHLgDGRMALECLFVGPYVSSHVWLQRWM--EIKEGCCDF--EMG-SCFEGCRISRESMEEAQEMVKRNEsFYGVRVGgEWNNEMILEWKGTPLLR 509
                    999899*******************9998..666654443..455.55**********************99999999677*************** PP

           GRAS 370 vSaWr 374
                    +SaWr
  Jcr4S03667.10 510 FSAWR 514
                    ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.877121492IPR005202Transcription factor GRAS
PfamPF035147.8E-38149514IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MVSQAFNQPS WPFYNIINSS IDQLGDDFYA TLMEMNEFSS SFSTQEDSSD ISSIPCFSNI  60
CPTEFASGTD DFLQPTLSVE DFLQNPTFGG EMEFIYGKLN DSEISNEFQN GWSPSPSIKS  120
SSEASMATPP SLILPEQEFE LDILISVLHL LKAYGEAIEN EQTDLANVIM TCLSEKVTLC  180
GEPLLRLAFN FSSQQNQHQK YLKQEAYKNF ETAFKAFYQI FLYGRFSHFA ANSVIVKAMP  240
ADAEIIHIVD FDIGEGVQWP PLLEVLAMLG KEVKLTTIKW EKCDQTPLMW NFEEAKRRLV  300
DYAKDLGLRL KMEEIGIEEL VNEIKKRRKR GSTKEWLVFN CMVGLPHMGR VRSRKLVKEF  360
LSVAKELLMG SNNNKGVITF GDGDFCESSK TSIGFGSFFE GNMVKYQALL ESIEYNFPIH  420
LGDGRMALEC LFVGPYVSSH VWLQRWMEIK EGCCDFEMGS CFEGCRISRE SMEEAQEMVK  480
RNESFYGVRV GGEWNNEMIL EWKGTPLLRF SAWRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1416551421375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052630.0KM405263.1 Jatropha curcas GRAS46 protein (GRAS46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089795.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A067JG060.0A0A067JG06_JATCU; GRAS46 protein
STRINGXP_002526659.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.13e-17GRAS family protein