PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03659.10
Common NameJCGZ_02547
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 344aa    MW: 38531.2 Da    PI: 5.7255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03659.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +++ G g+W++ ++  g++R++k+c++rw +yl
    Jcr4S03659.10 15 KGPWTPEEDKKLIEFIQENGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding56.18.7e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
    Jcr4S03659.10  68 RGKFSEEEEQIIINLHAVLGNK-WSAIAQNLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5181062IPR017930Myb domain
SuperFamilySSF466891.16E-3012109IPR009057Homeodomain-like
SMARTSM007175.6E-151464IPR001005SANT/Myb domain
PfamPF002493.9E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241669IPR009057Homeodomain-like
CDDcd001678.97E-121762No hitNo description
PROSITE profilePS5129427.63863117IPR017930Myb domain
SMARTSM007173.6E-1767115IPR001005SANT/Myb domain
PfamPF002491.3E-1668113IPR001005SANT/Myb domain
CDDcd001673.92E-1370113No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2870117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMGKSPSEDE NGLKKGPWTP EEDKKLIEFI QENGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQIII NLHAVLGNKW SAIAQNLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDHLNLLSNL PQLLAAANLS NLMINNVPWA DPTPLAKLQL LNLLQALNTS  180
PLPNMESLSA NINNTNNIYQ YLRTSSQLEG LLASNGQPSF LPSIPSLLET QDYHHHHHHQ  240
LPLSNDHSKM GSDVNNNNNG ELGPSCGIIQ MSNPEIDLPP LISATSPDTC NPTAFNQNPN  300
DISNPSSTST TFEAWGDLMD DEASENYWRD IMDQASSQLW PMSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347270.0KM034727.1 Jatropha curcas clone JcMYB107 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534382.10.0transcription factor MYB39
TrEMBLA0A067KTP00.0A0A067KTP0_JATCU; MYB family protein
STRINGcassava4.1_032869m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-90myb domain protein 107
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]