PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03651.20 | ||||||||
Common Name | JCGZ_12782, LOC105637330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 29655.7 Da PI: 8.045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.5 | 1.5e-24 | 15 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.........leleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWka 85 lp G++F Ptd+el+ +yLk k+ g++ +l ++i+++d+++++P +Lp +++ + +ewyfFs+r+k + tk+g+ + Jcr4S03651.20 15 LPFGYKFCPTDSELILFYLKSKILGQDpivkkksldQDLIDIIPTIDVFSSNPDQLPvGDYEHgSCSEWYFFSNRRKG-------KILTKDGFYRV 103 689***********************9877766655444559***************5444331455******99764.......348999****9 PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +sk k+el+g + L fy+gr kg+k++W + eyr+ Jcr4S03651.20 104 SSRNHVYMSKhKKELIGFVRKLDFYHGRPDKGSKSQWSIYEYRV 147 998877777767788***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-27 | 10 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.191 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-16 | 16 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEQVAVPSGY ERVVLPFGYK FCPTDSELIL FYLKSKILGQ DPIVKKKSLD QDLIDIIPTI 60 DVFSSNPDQL PVGDYEHGSC SEWYFFSNRR KGKILTKDGF YRVSSRNHVY MSKHKKELIG 120 FVRKLDFYHG RPDKGSKSQW SIYEYRVNPE WLQVNEMDHA TREKILNVVA CKVIYRQPPK 180 PEGTFELLGV RDVELFIKNQ EMDNVELELN EKDQKENENE NVQLELKTSR NERDRKGKEK 240 DQNEKGNERI KK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775330 | 1e-152 | KC775330.1 Jatropha curcas NAC transcription factor 052 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076157.1 | 0.0 | NAC domain-containing protein 41 | ||||
TrEMBL | R4N7R2 | 0.0 | R4N7R2_JATCU; NAC transcription factor 052 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14452 | 7 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 3e-18 | NAC domain containing protein 96 |
Link Out ? help Back to Top | |
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Entrez Gene | 105637330 |
Publications ? help Back to Top | |||
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