PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03589.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 324aa    MW: 37233.9 Da    PI: 8.1218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03589.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17100146148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed llv++vkq+G + W+ Ia+ +  gR +kqc++rw+++l
    Jcr4S03589.10 100 KGQWTPQEDRLLVQLVKQFGIKKWSHIAKLLD-GRVGKQCRERWHNHL 146
                      799*****************************.*************97 PP
2Myb_DNA-binding55.81e-17152194145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eEd +l++a+kq G++ W+ Ia++++ gRt++ +k++w+
    Jcr4S03589.10 152 KDAWSEEEDGILIEAHKQIGNR-WAEIAKRLP-GRTENTIKNHWN 194
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.30895150IPR017930Myb domain
SuperFamilySSF466893.07E-3198193IPR009057Homeodomain-like
SMARTSM007171.9E-1599148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-28101153IPR009057Homeodomain-like
PfamPF139211.0E-18103160No hitNo description
CDDcd001672.52E-14103146No hitNo description
PROSITE profilePS5129421.318151201IPR017930Myb domain
SMARTSM007171.3E-15151199IPR001005SANT/Myb domain
CDDcd001671.28E-11154197No hitNo description
Gene3DG3DSA:1.10.10.601.8E-22154201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
DIDPLIKTSL LQNGIDPLIE TSLLENGSCM ASKLPKIEAN HQNHIYYQNM SPNVVLDQDQ  60
VSCVTADNRG HNKKFDHRND KKLHQIKKVG KPQKKSHIIK GQWTPQEDRL LVQLVKQFGI  120
KKWSHIAKLL DGRVGKQCRE RWHNHLRPDI KKDAWSEEED GILIEAHKQI GNRWAEIAKR  180
LPGRTENTIK NHWNATKRRQ LSIRRKGKES NSRGTLLQSY IKTLTTQKQD QKNHYNESSV  240
SSPFVADQLN APTDYDDYIS EALNVSLEAN NLFDDNSYGF GVEESQMEYE MAMELDSLIK  300
GSTTSDQAMK EMDLVEFITQ GTQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-46982012105C-Myb DNA-Binding Domain
1msf_C4e-46982012105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346370.0KM034637.1 Jatropha curcas clone JcMYB017 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072509.20.0transcription factor MYB118
SwissprotQ9LVW41e-67MY118_ARATH; Transcription factor MYB118
TrEMBLA0A097HUI50.0A0A097HUI5_JATCU; MYB family protein
STRINGcassava4.1_028573m4e-98(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.15e-70myb domain protein 118
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]