PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03573.10
Common NameJCGZ_00994, LOC105633057, WRKY09
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 577aa    MW: 62538.7 Da    PI: 7.016
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03573.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32227284260
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Jcr4S03573.10 227 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 284
                    8****************************************.***************85 PP
2WRKY106.21.7e-33392450159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Jcr4S03573.10 392 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 450
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-26225285IPR003657WRKY domain
SuperFamilySSF1182908.76E-25225285IPR003657WRKY domain
SMARTSM007744.1E-34226284IPR003657WRKY domain
PfamPF031061.7E-24227283IPR003657WRKY domain
PROSITE profilePS5081122.791227285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37377452IPR003657WRKY domain
SuperFamilySSF1182902.35E-29384452IPR003657WRKY domain
PROSITE profilePS5081138.825387452IPR003657WRKY domain
SMARTSM007743.1E-39392451IPR003657WRKY domain
PfamPF031063.5E-26393450IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDNSNSEPGL RLSGPSDDVS DSGDPTRSES DNGGAAGSVG ARYKLMSPAK LPISRSPCIT  60
IPPGLSPTSF LESPVLLSNV KAEPSPTTGS FTKPQTGHGF LVSTSYSATT IPSNVFGERT  120
SSRFEFRPHA RSNLVSADMS HQRIEQSVHA QGPCQSQSLA SPKVKNEFAV PSNELSLSAS  180
LPIVTSGAST PTEADSDELN QIGPSNNGLQ ASQSDHKGGS VLSVSSDDGY NWRKYGQKHV  240
KGSEFPRSYY KCTHPNCEVK KLFERSHDGQ ITEIIYKGTH DHPKPQPSRR YTAGAVLSMQ  300
EDRSDKSSSL PGRDDKSSSA YGQVSHTMEP NGTPEQSPVT ANDDSIEGAE DDDDPFSKRR  360
KMDTGCFDVT PVVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTN  420
AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPTARTSSHD TAGPTAMNGP LRIRSDESET  480
ISLDLGVGIS ASAENRSNDQ QQALHSEFTQ SQNQTSGSSF RIVSRNPIPP YYGVLNGGMN  540
QYGSRQNPSE GRSVEIPPIT HSSYPYPQNM GRLLTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37227452877Probable WRKY transcription factor 4
2lex_A9e-37227452877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070967.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM9TMC30.0M9TMC3_JATCU; WRKY transcription factor 09
STRINGXP_002529048.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]