PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03530.20 | ||||||||
Common Name | GRAS45, JCGZ_17380, LOC105640733 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GRAS | ||||||||
Protein Properties | Length: 432aa MW: 49427.6 Da PI: 4.715 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 135 | 7.9e-42 | 68 | 432 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL + ea++ + +ela+a+ rl+e + p+g+ qRl yf +AL +++ + p +e++ + a+++f++++P+ +f+h+ta Jcr4S03530.20 68 HLLKAYGEALEMEITELADAITMRLKEKSCPTGSIWQRLSYYFIQALDEQVKS---------PLREEA---GMNYEIAFNVFYQIFPYGRFAHFTA 151 788888999999****************************************9.........555555...666777889**************** PP GRAS 99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N+ Ilea+ ++ e vHi+Df+i++G+QWp+ ++aLa + ++ lR+T ++ +++ ++e t+ L + +++g++++ + + +le++ e+ Jcr4S03530.20 152 NSVILEAIPKNaEIVHIVDFEIGNGIQWPPVIEALAMQ--DAKFLRLTSIKW---EEEGNYEYTKLLLYEHGRNFGLRLKVEEM---DLESFASEM 239 ********9997888**********************6..667********9...468899999****************9997...888888888 PP GRAS 194 Lrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvks...lsPk....vvvvveqe.....adh.nsesFlerflealeyysalfdsle 272 ++k+ E la n+++ l ++ d++ s++s ++Lk+ k+ l+ + ++++ + + n++ + f l + l+ s+e Jcr4S03530.20 240 KETKEsgegTEFLAFNCMVGLPHM-DKRISVKS-VIKFLKVAKDainLNCNngggIITFGDGIgwgkgIRGwNRNGYISIFEGQLAQFKILLQSIE 333 8888888899*************9.58888888.77888888743225543444489998843333335556999********************* PP GRAS 273 aklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkd 364 + +p++ e+ri +E +l + i++++ + +++ r+ + l+e G++p +++ ++ ++ak l+r+ +s y v +++++vlg ++ Jcr4S03530.20 334 THFPHHLkEARIAIECLFLVPYISSLIDIQMWKHISREI------RTLSELGLEPWRMRIENLMEAKELVREEESF-YWVSfegVKHNQMVLGYME 422 ****987799**********************9888876......89*************************9944.7776435569********* PP GRAS 365 rpLvsvSaWr 374 p++ vS+Wr Jcr4S03530.20 423 TPVTKVSSWR 432 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.491 | 40 | 432 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-39 | 68 | 432 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MDVGNLPNLV TNTTSENAYA QESCLEDDGI EFESLHVLSI ASDYQSTDLS LLLPCDGMQV 60 DNQLSILHLL KAYGEALEME ITELADAITM RLKEKSCPTG SIWQRLSYYF IQALDEQVKS 120 PLREEAGMNY EIAFNVFYQI FPYGRFAHFT ANSVILEAIP KNAEIVHIVD FEIGNGIQWP 180 PVIEALAMQD AKFLRLTSIK WEEEGNYEYT KLLLYEHGRN FGLRLKVEEM DLESFASEMK 240 ETKESGEGTE FLAFNCMVGL PHMDKRISVK SVIKFLKVAK DAINLNCNNG GGIITFGDGI 300 GWGKGIRGWN RNGYISIFEG QLAQFKILLQ SIETHFPHHL KEARIAIECL FLVPYISSLI 360 DIQMWKHISR EIRTLSELGL EPWRMRIENL MEAKELVREE ESFYWVSFEG VKHNQMVLGY 420 METPVTKVSS WR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-13 | 84 | 432 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM405271 | 0.0 | KM405271.1 Jatropha curcas GRAS45 protein (GRAS45) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020537274.1 | 0.0 | nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A067LEZ0 | 0.0 | A0A067LEZ0_JATCU; GRAS45 protein | ||||
STRING | cassava4.1_032945m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4274 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-19 | RGA-like 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105640733 |
Publications ? help Back to Top | |||
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