PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03181.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 473aa    MW: 51399.6 Da    PI: 4.8496
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03181.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31243301259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Jcr4S03181.10 243 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 301
                    699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109237303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-31239303IPR003657WRKY domain
SuperFamilySSF1182903.14E-26240303IPR003657WRKY domain
SMARTSM007741.4E-37242302IPR003657WRKY domain
PfamPF031061.0E-25244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDNYQGDLTD ILRASGGALG QSDVSNWEFP CDPLNLSSSS SFGSLLVMED SRNNNSNNSN  60
IFGDPFCNMR DPLLHELNVA VSGSTYFSSP NPTDHHLLTP TSTAATPIVV LDDTRNDINN  120
QNINLARKVF EDQEMSKSLF SRIQISQNDN NSDNPTRLPV SSCDSGVIAA SSRGFKPAPM  180
VSIDMINTNS SSKGCLIENP GPVQISSPRN LGIKRRKSQA KKVVCIPAPA AANSRPSGEV  240
VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRTDPNML VITYTSEHNH  300
PWPTQRNALA GSTRSQPPKN IGATSSKSST SSLQAEKTGN AKEEYKESSS NDTFSPTMVS  360
TACGSSSTAI KEEINEEIEK QLEMDNDTEL SEGGFPYRPA MAAESSLQQS EDFFADLGEI  420
EADSLDLLFS QGFNATSGDQ DQKDGKSLDP YGFFDWSGNI NNNISFGEAK KGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-25217304280Disease resistance protein RRS1
5w3x_D1e-25217304280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853010.0KC485301.1 Jatropha curcas WRKY transcription factor 49 (WRKY49) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075522.10.0probable WRKY transcription factor 14
TrEMBLS5CKH70.0S5CKH7_JATCU; WRKY transcription factor 49
STRINGcassava4.1_030132m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-96WRKY DNA-binding protein 14