PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03153.10 | ||||||||
Common Name | JCGZ_12260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 24439.8 Da PI: 8.8616 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.4e-20 | 54 | 108 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Jcr4S03153.10 54 KKRKLSSEQVNLLEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 108 45689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121.6 | 3.8e-39 | 54 | 145 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e++rLe+ev +L+e+l+e Jcr4S03153.10 54 KKRKLSSEQVNLLEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESIVVEKCRLESEVLKLKEQLSE 145 9****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.022 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-19 | 52 | 113 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-18 | 53 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.1E-17 | 54 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-21 | 56 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.45E-15 | 56 | 110 | No hit | No description |
PRINTS | PR00031 | 8.4E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTTTMSNKVE DHMVLLSQLY PGVYTQMVPQ QGEAKPRRRR KKNKGGEGGV GGAKKRKLSS 60 EQVNLLEKNF GNEHKLESER KDKLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYTKLKT 120 AHESIVVEKC RLESEVLKLK EQLSEAENEI HRLTERIDGV SSNSPSSTLS MEAMKPTFLG 180 EFGMEGYGDI FYMPENYYIH GMEWFNDQLY M |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 55 | RRRKKNKGGEGGVGGAKKR |
2 | 39 | 56 | RKKNKGGEGGVGGAKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079075.1 | 1e-156 | homeobox-leucine zipper protein ATHB-40 isoform X1 | ||||
Refseq | XP_020537183.1 | 1e-156 | homeobox-leucine zipper protein ATHB-40 isoform X2 | ||||
Swissprot | Q9ZU70 | 5e-78 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A067KIZ9 | 1e-155 | A0A067KIZ9_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_026937m | 1e-111 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 9e-59 | homeobox protein 21 |
Publications ? help Back to Top | |||
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