PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03065.20 | ||||||||
Common Name | JCGZ_13349, LOC105639381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | YABBY | ||||||||
Protein Properties | Length: 185aa MW: 20877.6 Da PI: 8.0734 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 197.1 | 7.5e-61 | 6 | 158 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + ++ +++++++ s++s Jcr4S03065.20 6 DAVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPSYSLPDYRIELGSSSKHNNKISMRSP 93 5679********************************************99999998885........22222233333333333333333333332 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ v+rPPekrqr+Psayn+fikeeiqrika+nPdishreafs+aaknWah+P+ihfgl Jcr4S03065.20 94 ------ASHASEERVVNRPPEKRQRIPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIHFGL 158 ......22233334589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.6E-70 | 9 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.2E-8 | 101 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-4 | 106 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSSCVDAVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAPSYS LPDYRIELGS SSKHNNKISM RSPASHASEE RVVNRPPEKR QRIPSAYNQF 120 IKEEIQRIKA NNPDISHREA FSTAAKNWAH YPHIHFGLML ETNNQAQLDD ASEKHLKSRA 180 ALYNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052446 | 4e-72 | BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA. | |||
GenBank | BT133581 | 4e-72 | BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012078813.1 | 1e-137 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 5e-89 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A067KKT0 | 1e-136 | A0A067KKT0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_017143m | 1e-128 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-91 | YABBY family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105639381 |
Publications ? help Back to Top | |||
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