PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02989.50

Common Name

JCGZ_24575, LOC105631646

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 297aa MW: 32302.9 Da PI: 8.1349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02989.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Jcr4S02989.50 101 FSCTFCKREFSTSQALGGHQNAH 123 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.87E-6	98	128	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-4	99	127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.489	101	128	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDPVASSDLP PPSPQPCPSD SSSISAASEG VNSDVKNKFI AMKMKEKLSE SNSPDLLNLT 60 LSSEDSIHES KLELNLFSSS TKDQFTDDDS KIKGSEQPRV FSCTFCKREF STSQALGGHQ 120 NAHKQERALA KRRQGMDFGT AFGHYPYYPY STLSTHHHSL FGSFSRSSLG VRMESSIHKP 180 PSSYSWMSTV GGGSPVNTIP YRFSHGGGWP MPNPITSQPS IDKLKIGNLN AINNNGGFGI 240 SNPSSSNKKI DLFRNIGISP SNVGIIRPTG DHHLQRPDHS ISYDQVDASG IDLSLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069217.1	0.0	zinc finger protein 3
TrEMBL	A0A067KWI8	0.0	A0A067KWI8_JATCU; Uncharacterized protein
STRING	XP_002525555.1	1e-70	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	2e-20	zinc finger protein 7

Link Out ? help Back to Top
Entrez Gene	105631646

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]