PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02988.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 347aa MW: 37784.4 Da PI: 8.3584

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02988.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.8	1.5e-13	20	71	1	51
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpe 51 +CaaCk+l+++C+++C +a yfp + p+kf +v lFG + ++ +l++ ++ Jcr4S02988.10 20 PCAACKILGQRCTDKCYIASYFPPTTePHKFTVVGSLFGGDDIVDYLQQNSN 71 7*******************775549*****************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.166	19	129	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-12	20	71	IPR004883	Lateral organ boundaries, LOB
Pfam	PF16135	6.5E-7	229	254	IPR032308	Jas TPL-binding domain

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
RLPNFFSHVA GPPSATVSGP CAACKILGQR CTDKCYIASY FPPTTEPHKF TVVGSLFGGD 60 DIVDYLQQNS NSSSYVPLLL LLRDTSKDGT QLQANPSKTS NINGQRQPML ANSENSKAHS 120 YSSSSKPLLM MFGTNDDKGT LTSPANHLGD NIDLELQAEM EDESLKFIVD QRDKVAHKDD 180 SKDFTSAHPY ITSSKPPEIF GSGYPNLRWV STTGSGPKGR TISGITYRYT TQIKIVCACH 240 GSHMSPEEFV RHASEENVNL ENGNGSASAS FPSTDPAYIE PWWPGFSSSS RGTQEDKLAV 300 KTSGVQFIKG KHLSRLDSIK NLSRPKPRLR PVSVSTISAL VPPVQKL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

RLPNFFSHVA GPPSATVSGP CAACKILGQR CTDKCYIASY FPPTTEPHKF TVVGSLFGGD  60
DIVDYLQQNS NSSSYVPLLL LLRDTSKDGT QLQANPSKTS NINGQRQPML ANSENSKAHS  120
YSSSSKPLLM MFGTNDDKGT LTSPANHLGD NIDLELQAEM EDESLKFIVD QRDKVAHKDD  180
SKDFTSAHPY ITSSKPPEIF GSGYPNLRWV STTGSGPKGR TISGITYRYT TQIKIVCACH  240
GSHMSPEEFV RHASEENVNL ENGNGSASAS FPSTDPAYIE PWWPGFSSSS RGTQEDKLAV  300
KTSGVQFIKG KHLSRLDSIK NLSRPKPRLR PVSVSTISAL VPPVQKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020536988.1	0.0	rho GTPase-activating protein gacK-like
TrEMBL	A0A067LCG4	1e-172	A0A067LCG4_JATCU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-15	LOB domain-containing protein 11