PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S02985.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 198aa MW: 22756.2 Da PI: 8.7009 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.3 | 7.5e-29 | 133 | 187 | 1 | 55 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege 55 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYe++ Jcr4S02985.30 133 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEEK 187 59**************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-30 | 118 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-25 | 125 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.785 | 128 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-30 | 133 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-22 | 134 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MEGGEREVAN YELQVSFSTP QAIHEMGFVP FEENQVFSFL APSNSHQSSQ ISQPLNTTTT 60 TNNHMGFSSH NDQVGTLDPK ARIEENCTAS GANDGNNSWW RNSSSSEKNK VKVRRKLREP 120 RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRSYYRCT HSNCRVKKRV ERLSEDCRMV 180 ITTYEEKPVS AGPAKYDY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-23 | 124 | 187 | 8 | 71 | Probable WRKY transcription factor 4 |
2lex_A | 6e-23 | 124 | 187 | 8 | 71 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 117 | KVRRKLR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083720.1 | 1e-138 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 3e-66 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | S5CH33 | 1e-137 | S5CH33_JATCU; WRKY transcription factor 16 | ||||
STRING | cassava4.1_016397m | 1e-105 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7294 | 32 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44745.1 | 3e-55 | WRKY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|