PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S02981.30 | ||||||||
Common Name | JCGZ_08456 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 680aa MW: 73420.4 Da PI: 5.5415 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 255 | 275 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Jcr4S02981.30 255 PCPEFRK-GSCRLGDACEYAHG 275 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.65E-16 | 34 | 151 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.1E-9 | 56 | 143 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.645 | 75 | 145 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0024 | 75 | 105 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 4.1E-16 | 76 | 154 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.46E-14 | 77 | 169 | No hit | No description |
PROSITE profile | PS50088 | 12.422 | 110 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 7.2E-4 | 110 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 8.8E-5 | 250 | 276 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-5 | 255 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.634 | 255 | 277 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 283 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 285 | 308 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.221 | 285 | 309 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 680 aa Download sequence Send to blast |
MCTGSKRKPT HTGFIMENEF QKQDGYYCDL SILLELSASN DLLGFKRAIE EEGHDVNELG 60 LWYGRRIGSR KMGFEERTPL MIAALFGSKD ILNYILEMGR VDVNRCCGSD GATALHCAVA 120 GGSASTLEVV KLLLDASADP DAVDANGNHA ADLIAPVVSS GFVSKRKALE IMLKGGSTTE 180 ETCFMVDQNS NETDGQEQQE ASTPRVSKDG TEKKEYPVDL TLPDIKNGIY ECPFVHPGEN 240 ARRRDPRKYH YSCVPCPEFR KGSCRLGDAC EYAHGIFECW LHPAQYRTRL CKDETNCSRR 300 VCFFAHKPEE LRPLYASTGS AVPSPRSFSA NCSGLDMGSL SPLALGSPSV LIPPTSTPPM 360 TPTGSSSPMG GWPNQCNIVP PTLQLPGSRL KSALSARDMD LEMELLGLDN HRRRQQQLID 420 EISGLSSPSS WNNGLSTASA YAAPGDRTAE LNRLGGVKPT NLEDIFGSAD PTILSPVQGL 480 SVDATTSKLQ SPTGIQMRQN INQQLRSSYP AGFSSSPVRT STFGIDPSGP AAAAVLSSRS 540 AAFAKRSQSF IERSAVNRHT GFSSPTSSAT IMPSNLSDWG SPDGKLDWGI QGEQLNKLQK 600 SASFGIRSNG NSLAGSAVPL PATLDEPDVS WVQSLVKDTP SMNSGQLGFE QQQCHLNTGG 660 SEMLPAWVEQ LYIEQEQMVA |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067418.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A067LPM4 | 0.0 | A0A067LPM4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_002672m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|