PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02861.50
Common NameJCGZ_15985, LOC105630806
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 412aa    MW: 45020.8 Da    PI: 6.1495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02861.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10255303355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Jcr4S02861.50 255 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 303
                    58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.20E-11250307No hitNo description
SuperFamilySSF474596.28E-17250319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16253320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7255303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGSTSDNNDG MAFQSGGQSV MNCQSSGMTT NPFFASPAWD PVVSLGQHDS FGGSSMVTQT  60
EFTNSSYPVV MENQGITTTS HLVHYPSDSS YVELVPKFPS YGSGSFSEMV SSFHLTDCGP  120
QIANTGSHPN YASNKDPNSE RTVTNGAQSQ EDHQLTEDHI LGASPDGKRR KRLAEPNSAF  180
DPNKTAEGEP QKDPSGNSSD FQKEQDEKKP RTEQNTGANL RGKQAAKPTK DNSNSGEAPK  240
ENYIHVRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ  300
SLQQQVEFLS MKLATVNPEL NIDIERILSK DILHPRGGNS AFMGFTPGMN AHPYSHGMFP  360
STIPAIPNTN PQFPHVPHTV LDNDLQSLFQ MGFDSSSAMD SLGPNGRMKP EL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068164.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A067L2W50.0A0A067L2W5_JATCU; Uncharacterized protein
STRINGXP_002510047.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-101bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]