PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02843.120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 276aa MW: 31297.6 Da PI: 8.8448 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 99 | 121 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L+ H + H Jcr4S02843.120 99 SCSVCSRVYPTSRLLNIHVSEaH 121 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.63 | 71 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.7 | 98 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 100 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 157 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 159 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MFKLQGVHLV QFGLNLKISV TEAKRSAMAM VVDIDAKGTL GFPYWTPIAL DLTEDEKHRL 60 QNLVDDDDRE VFCPIVGCGA RLTSLEDFED HYNARHTASC SVCSRVYPTS RLLNIHVSEA 120 HDSFFQAKVA RGYAMAIYAF DSFFLAPWWL ADTMCNYECL VEGCGLKFKN YKSRQQHLVD 180 KHKFPSTFEF FKKTHPSKKA RQKHQRKQAV QKREETSSKM EVEGETIDGL VSAVSRLTTS 240 DSTPSSISFG RRNTHGLTFV PRAIRQESSA QSGTKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070284.1 | 1e-160 | zinc finger protein 511 | ||||
TrEMBL | A0A067LCT1 | 1e-159 | A0A067LCT1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014543m | 1e-122 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 2e-91 | zinc ion binding;nucleic acid binding;zinc ion binding |