PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02829.20

Common Name

GRAS45, JCGZ_17380, LOC105640733

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 432aa MW: 49427.6 Da PI: 4.715

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02829.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	135	7.9e-42	68	432	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL + ea++ + +ela+a+ rl+e + p+g+ qRl yf +AL +++ + p +e++ + a+++f++++P+ +f+h+ta Jcr4S02829.20 68 HLLKAYGEALEMEITELADAITMRLKEKSCPTGSIWQRLSYYFIQALDEQVKS---------PLREEA---GMNYEIAFNVFYQIFPYGRFAHFTA 151 788888999999**************************************9.........555555...666777889************ PP GRAS 99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N+ Ilea+ ++ e vHi+Df+i++G+QWp+ ++aLa + ++ lR+T ++ +++ ++e t+ L + +++g++++ + + +le++ e+ Jcr4S02829.20 152 NSVILEAIPKNaEIVHIVDFEIGNGIQWPPVIEALAMQ--DAKFLRLTSIKW---EEEGNYEYTKLLLYEHGRNFGLRLKVEEM---DLESFASEM 239 ****9997888******************6..667****9...468899999************9997...888888888 PP GRAS 194 Lrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvks...lsPk....vvvvveqe.....adh.nsesFlerflealeyysalfdsle 272 ++k+ E la n+++ l ++ d++ s++s ++Lk+ k+ l+ + ++++ + + n++ + f l + l+ s+e Jcr4S02829.20 240 KETKEsgegTEFLAFNCMVGLPHM-DKRISVKS-VIKFLKVAKDainLNCNngggIITFGDGIgwgkgIRGwNRNGYISIFEGQLAQFKILLQSIE 333 8888888899*********9.58888888.77888888743225543444489998843333335556999***************** PP GRAS 273 aklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkd 364 + +p++ e+ri +E +l + i++++ + +++ r+ + l+e G++p +++ ++ ++ak l+r+ +s y v +++++vlg ++ Jcr4S02829.20 334 THFPHHLkEARIAIECLFLVPYISSLIDIQMWKHISREI------RTLSELGLEPWRMRIENLMEAKELVREEESF-YWVSfegVKHNQMVLGYME 422 987799******************9888876......89*********************9944.7776435569***** PP GRAS 365 rpLvsvSaWr 374 p++ vS+Wr Jcr4S02829.20 423 TPVTKVSSWR 432 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.491	40	432	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-39	68	432	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MDVGNLPNLV TNTTSENAYA QESCLEDDGI EFESLHVLSI ASDYQSTDLS LLLPCDGMQV 60 DNQLSILHLL KAYGEALEME ITELADAITM RLKEKSCPTG SIWQRLSYYF IQALDEQVKS 120 PLREEAGMNY EIAFNVFYQI FPYGRFAHFT ANSVILEAIP KNAEIVHIVD FEIGNGIQWP 180 PVIEALAMQD AKFLRLTSIK WEEEGNYEYT KLLLYEHGRN FGLRLKVEEM DLESFASEMK 240 ETKESGEGTE FLAFNCMVGL PHMDKRISVK SVIKFLKVAK DAINLNCNNG GGIITFGDGI 300 GWGKGIRGWN RNGYISIFEG QLAQFKILLQ SIETHFPHHL KEARIAIECL FLVPYISSLI 360 DIQMWKHISR EIRTLSELGL EPWRMRIENL MEAKELVREE ESFYWVSFEG VKHNQMVLGY 420 METPVTKVSS WR

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MDVGNLPNLV TNTTSENAYA QESCLEDDGI EFESLHVLSI ASDYQSTDLS LLLPCDGMQV  60
DNQLSILHLL KAYGEALEME ITELADAITM RLKEKSCPTG SIWQRLSYYF IQALDEQVKS  120
PLREEAGMNY EIAFNVFYQI FPYGRFAHFT ANSVILEAIP KNAEIVHIVD FEIGNGIQWP  180
PVIEALAMQD AKFLRLTSIK WEEEGNYEYT KLLLYEHGRN FGLRLKVEEM DLESFASEMK  240
ETKESGEGTE FLAFNCMVGL PHMDKRISVK SVIKFLKVAK DAINLNCNNG GGIITFGDGI  300
GWGKGIRGWN RNGYISIFEG QLAQFKILLQ SIETHFPHHL KEARIAIECL FLVPYISSLI  360
DIQMWKHISR EIRTLSELGL EPWRMRIENL MEAKELVREE ESFYWVSFEG VKHNQMVLGY  420
METPVTKVSS WR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-13	84	432	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405271	0.0	KM405271.1 Jatropha curcas GRAS45 protein (GRAS45) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020537274.1	0.0	nodulation-signaling pathway 2 protein
TrEMBL	A0A067LEZ0	0.0	A0A067LEZ0_JATCU; GRAS45 protein
STRING	cassava4.1_032945m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4274	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-19	RGA-like 2

Link Out ? help Back to Top
Entrez Gene	105640733

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]