PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S02724.10 | ||||||||
Common Name | JCGZ_09746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 81aa MW: 9090.39 Da PI: 5.8326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.6e-06 | 19 | 55 | 21 | 54 |
HHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS HLH 21 eeLrellPkas...kapskKlsKaeiLekAveYIksL 54 +L++ll +++ K+s +e+Le+A++YI+ L Jcr4S02724.10 19 LQLQSLLSAEErqiTTTQSKVSLMEVLEEACNYIRRL 55 5666666663358888999****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-5 | 18 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-6 | 18 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 81 aa Download sequence Send to blast |
MSAMRSNPKH ETEAQALILQ LQSLLSAEER QITTTQSKVS LMEVLEEACN YIRRLNGEVQ 60 ELSSRITGLM ASSDTIPRNL K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020538583.1 | 6e-52 | transcription factor PRE3-like | ||||
TrEMBL | A0A067LAR0 | 1e-50 | A0A067LAR0_JATCU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26945.1 | 2e-09 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|