PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02715.10

Common Name

JCGZ_05589, LOC105628152

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 272aa MW: 30474.9 Da PI: 7.9339

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02715.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129.2	1.1e-40	17	78	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Jcr4S02715.10 17 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 78 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	5	70	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-34	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MLVCTKPHQE RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS LSQPRYFCKS CRRYWTKGGT 60 LRNVPVGGGC RKNKRSSSSK KTQDHHQLNS NNTNPLTSLP SLTYDSNDLT LAFARLQKQS 120 NGQLGFDDRD LPILGNPNNT HSDMLINPPA PFLEALRTGF LDTQNNNNNF QNLYFGYGNG 180 NMGDVENSGV CGNSGEMMIP YEDMSSAGTQ AVTVTTMKQE MCSDREDDQT SKILWGFPWQ 240 LNGNGDLDSG KESWINGFGS TNWHGLLNSP LM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	4e-45	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	4e-45	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012064896.1	0.0	dof zinc finger protein DOF2.1
TrEMBL	A0A067L6S2	0.0	A0A067L6S2_JATCU; Uncharacterized protein
STRING	XP_002532252.1	1e-145	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	9e-38	Dof family protein

Link Out ? help Back to Top
Entrez Gene	105628152

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]