PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02686.40

Common Name

JCGZ_00489, LOC105629446

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 855aa MW: 98111.1 Da PI: 6.8695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02686.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.6	4.4e-23	97	183	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF +++++s++sk++g++++ + Cs+ g+++e++ + ++r+ +t+Cka +++k+++dgkw+++++ eHnHe++p Jcr4S02686.40 97 SFYRDYARFVGFGITIKASRRSKKSGNFIDVKIACSRFGSKRESSVT----VNPRSCIKTDCKAGMHMKRTQDGKWVIYSFIREHNHEIFP 183 5***************************************99888....99*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-20	97	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-24	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.198	545	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-6	547	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-5	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MEIDLELPSL EQEKLDTGSN TNIDAMDSAD GLHVSDEEIK SPASEQVARP CVPNENEHCT 60 TSGENVEGNS IRAVASKHLM CEPRNGLVFE TKEAAYSFYR DYARFVGFGI TIKASRRSKK 120 SGNFIDVKIA CSRFGSKRES SVTVNPRSCI KTDCKAGMHM KRTQDGKWVI YSFIREHNHE 180 IFPDDFHNSV QGRNKQSGVV ACQKTGLQLA LEENDMQVML DYFMCMQAEN PNFFYSLDLD 240 HQNRLRNVFW VDAKGRNDYS FFCDVVFFDT FYLRSNYKVP YASIIGINNH CQFILLGCSL 300 IGEQSVSTFV WLMQTWRKAM GDRAPNVIIT EQDKCLNEAV ADVFPDTHHC FCLWHILSKM 360 PENLSRVMDE GEAFMSIFNK CIYRSWTDVQ FEKRWWKMVD KFELRQDEWF RSLYEDRKKW 420 VPTYMQDIFL AGMSTTERHG SIASFFDNYI HREATFKEFM ELYKKFLQDR IKMEAKADFE 480 TRNKQPALRS HSAIEKQISR LYTESVFKKF QVEVLGVVSC QLQKESEDGA TVNFRVDDFE 540 KQQDFVVSWN ETASDIRCLC RSFDYRGFLC KHAILVLHMS GISNIPSRYI LKRWTKDAKT 600 TQVLTEVSNG IPYRAQHFND LCRRAIKLCE AGSLSQEAYH IAFKALEEIL ERCAGVNNSI 660 RSVLEPNTLA VHGFLDIEEE NRGNSITKSI KKKKICKKKK VLTVPEGMTI GLQDNYQQLD 720 QINSRTHATG NCYVPQQDMQ DMEMGSRATT TFDGFYGSQH SIRGAGQLDS VSPIRDDYYS 780 NQQGLQGLGQ LHSIPTCVNS YVAQQSMPGL GQLGFRAPTE QDCFEIHNNS QDMGQPVGST 840 QYPGISPKLL HDKRL

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MEIDLELPSL EQEKLDTGSN TNIDAMDSAD GLHVSDEEIK SPASEQVARP CVPNENEHCT  60
TSGENVEGNS IRAVASKHLM CEPRNGLVFE TKEAAYSFYR DYARFVGFGI TIKASRRSKK  120
SGNFIDVKIA CSRFGSKRES SVTVNPRSCI KTDCKAGMHM KRTQDGKWVI YSFIREHNHE  180
IFPDDFHNSV QGRNKQSGVV ACQKTGLQLA LEENDMQVML DYFMCMQAEN PNFFYSLDLD  240
HQNRLRNVFW VDAKGRNDYS FFCDVVFFDT FYLRSNYKVP YASIIGINNH CQFILLGCSL  300
IGEQSVSTFV WLMQTWRKAM GDRAPNVIIT EQDKCLNEAV ADVFPDTHHC FCLWHILSKM  360
PENLSRVMDE GEAFMSIFNK CIYRSWTDVQ FEKRWWKMVD KFELRQDEWF RSLYEDRKKW  420
VPTYMQDIFL AGMSTTERHG SIASFFDNYI HREATFKEFM ELYKKFLQDR IKMEAKADFE  480
TRNKQPALRS HSAIEKQISR LYTESVFKKF QVEVLGVVSC QLQKESEDGA TVNFRVDDFE  540
KQQDFVVSWN ETASDIRCLC RSFDYRGFLC KHAILVLHMS GISNIPSRYI LKRWTKDAKT  600
TQVLTEVSNG IPYRAQHFND LCRRAIKLCE AGSLSQEAYH IAFKALEEIL ERCAGVNNSI  660
RSVLEPNTLA VHGFLDIEEE NRGNSITKSI KKKKICKKKK VLTVPEGMTI GLQDNYQQLD  720
QINSRTHATG NCYVPQQDMQ DMEMGSRATT TFDGFYGSQH SIRGAGQLDS VSPIRDDYYS  780
NQQGLQGLGQ LHSIPTCVNS YVAQQSMPGL GQLGFRAPTE QDCFEIHNNS QDMGQPVGST  840
QYPGISPKLL HDKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066433.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X3
Refseq	XP_020533160.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X3
Refseq	XP_020533161.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X3
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A067LE68	0.0	A0A067LE68_JATCU; Uncharacterized protein
STRING	VIT_03s0017g01830.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Entrez Gene	105629446

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]