PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02617.40

Common Name

GRAS41, JCGZ_19527, LOC105642420

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 585aa MW: 66224.1 Da PI: 4.7966

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02617.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	302.7	8.9e-93	215	583	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshl 96 Ll+ Ae + ++++ +a +lL++ as+ g+p+qR++ yf+eAL++r+ + +++++ k l +++ + + + + a+ + +++ P+ +++++ Jcr4S02617.40 215 SLLASAENIGNQQFDRAGRLLKQCDLFASNIGNPVQRVVYYFVEALRERIDKeTGKTTLKGLGKKQSFDIDeaMMTPNLAVMASHQLMPFGQIAQF 310 58999*********************************************788888888866666543334444445555699******* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 + qaI e v +++r+HiiD+ i +G+QW L+qaL sR e p l+iT+++ +s+ +++tg+ L++fAe++++pf+fn++ ++++++++ Jcr4S02617.40 311 AGIQAIEENVGNAKRIHIIDLAIRNGIQWTVLMQALVSRGECPLqLLKITAIAT---TSAYFIKKTGKMLTSFAETMNLPFSFNIVEVSDFSAIKE 403 ***********************************96554499***...58999****************************** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 + L+v+++E++aV ++ +l +l+++ d+v+k++++++P v+v++e ea+hns++F++rf+eal +ysa fd+l+a + r++++r+ +E Jcr4S02617.40 404 NLLEVDKEETIAVYAEFMPRSLI----ALPNRLDSVMKMIRNVNPCVMVFAEVEANHNSPTFVNRFIEALFFYSAYFDCLDACFERDDQNRMIMES 495 *************877776....88888899********************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++g+ i+n +a+eg+er+ r+ +le Wr+ + ++G+++ +ls++ qa+l+++k++ +d +++++ +slv+gWk+ pL s+SaW+ Jcr4S02617.40 496 MYFGKGIRNTIAAEGEERIIRNVKLEVWRMFFARFGMEETELSSSSLFQAELVIKKFSfGDSCMLDKDGKSLVFGWKGTPLHSLSAWK 583 ******************************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.28	186	562	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-90	215	583	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MFPFQTSNYD DSNYSTFQDK FSLTNVSFYS LDVENINTKG SFYGVEERGE SAGVDTISSV 60 NGLYQDNIWK QELPIPKYEQ QEQKQQSFSD YEQFDDLRFP ILSSQLQTCN GIEEVGPEKE 120 KACPFSSLQL LKSHSNGFKQ FSSGRVIEPS NYTHYSSNKA VDEGLSTEQI MRIAGSRFIQ 180 SAGQEVDVGF SFNHPFDSFS GLSDEDTKMV ELAISLLASA ENIGNQQFDR AGRLLKQCDL 240 FASNIGNPVQ RVVYYFVEAL RERIDKETGK TTLKGLGKKQ SFDIDEAMMT PNLAVMASHQ 300 LMPFGQIAQF AGIQAIEENV GNAKRIHIID LAIRNGIQWT VLMQALVSRG ECPLQLLKIT 360 AIATTSAYFI KKTGKMLTSF AETMNLPFSF NIVEVSDFSA IKENLLEVDK EETIAVYAEF 420 MPRSLIALPN RLDSVMKMIR NVNPCVMVFA EVEANHNSPT FVNRFIEALF FYSAYFDCLD 480 ACFERDDQNR MIMESMYFGK GIRNTIAAEG EERIIRNVKL EVWRMFFARF GMEETELSSS 540 SLFQAELVIK KFSFGDSCML DKDGKSLVFG WKGTPLHSLS AWKFR

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MFPFQTSNYD DSNYSTFQDK FSLTNVSFYS LDVENINTKG SFYGVEERGE SAGVDTISSV  60
NGLYQDNIWK QELPIPKYEQ QEQKQQSFSD YEQFDDLRFP ILSSQLQTCN GIEEVGPEKE  120
KACPFSSLQL LKSHSNGFKQ FSSGRVIEPS NYTHYSSNKA VDEGLSTEQI MRIAGSRFIQ  180
SAGQEVDVGF SFNHPFDSFS GLSDEDTKMV ELAISLLASA ENIGNQQFDR AGRLLKQCDL  240
FASNIGNPVQ RVVYYFVEAL RERIDKETGK TTLKGLGKKQ SFDIDEAMMT PNLAVMASHQ  300
LMPFGQIAQF AGIQAIEENV GNAKRIHIID LAIRNGIQWT VLMQALVSRG ECPLQLLKIT  360
AIATTSAYFI KKTGKMLTSF AETMNLPFSF NIVEVSDFSA IKENLLEVDK EETIAVYAEF  420
MPRSLIALPN RLDSVMKMIR NVNPCVMVFA EVEANHNSPT FVNRFIEALF FYSAYFDCLD  480
ACFERDDQNR MIMESMYFGK GIRNTIAAEG EERIIRNVKL EVWRMFFARF GMEETELSSS  540
SLFQAELVIK KFSFGDSCML DKDGKSLVFG WKGTPLHSLS AWKFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-39	220	585	27	381	Protein SCARECROW
5b3h_A	3e-39	220	585	26	380	Protein SCARECROW
5b3h_D	3e-39	220	585	26	380	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405292	0.0	KM405292.1 Jatropha curcas GRAS41 protein (GRAS41) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082630.1	0.0	DELLA protein RGL1
TrEMBL	A0A067JYC8	0.0	A0A067JYC8_JATCU; GRAS41 protein
STRING	XP_002523464.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-56	RGA-like 2

Link Out ? help Back to Top
Entrez Gene	105642420

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]