PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02590.80 | ||||||||
Common Name | JCGZ_20720, LOC105645923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GRF | ||||||||
Protein Properties | Length: 204aa MW: 22291.3 Da PI: 9.0596 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 82.2 | 4.6e-26 | 135 | 179 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++l+++k+CErH+hrgr+rsrk +e+ Jcr4S02590.80 135 DPEPGRCRRTDGKKWRCSKEALPDQKYCERHMHRGRQRSRKLVEA 179 79***************************************9985 PP | |||||||
2 | QLQ | 38.3 | 4.1e-14 | 68 | 102 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a+ PvP +L+++i+k Jcr4S02590.80 68 FTILQLQELQLQSLIYKYIEAGFPVPYNLVLPIWK 102 7888******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 0.0023 | 66 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.117 | 67 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-10 | 68 | 101 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.77 | 135 | 179 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.9E-22 | 136 | 178 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
METQAPPSKI ARLADSSIVQ ASCLSMERNG SSGGPGSPTV CLGLALGHGS GSTDNRTIPA 60 LSTAPNGFTI LQLQELQLQS LIYKYIEAGF PVPYNLVLPI WKSVSSPLNS SLHQLYPTLM 120 VGSSQMQWEC RNGMDPEPGR CRRTDGKKWR CSKEALPDQK YCERHMHRGR QRSRKLVEAA 180 SQTNTSNSNT STNLSISLPL STEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087056.1 | 1e-150 | growth-regulating factor 10 | ||||
Swissprot | Q6EPP9 | 5e-42 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A067K194 | 1e-149 | A0A067K194_JATCU; Uncharacterized protein | ||||
STRING | XP_002509650.1 | 1e-87 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-29 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105645923 |
Publications ? help Back to Top | |||
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