PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02546.10
Common NameJCGZ_14207
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27294.2 Da    PI: 4.5016
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02546.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-193589256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++++f++eq++ Le++Fe+++ +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  Jcr4S02546.10 35 KNKRRFSDEQIKSLETMFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 89
                   67789*************************************************9 PP
2HD-ZIP_I/II122.32.4e-3936127293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +krr+s+eq+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy++L+++y++l+++ e+L+ke+++L+ +l++
  Jcr4S02546.10  36 NKRRFSDEQIKSLETMFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSVLRANYNNLASRFETLKKEKQALAIQLQK 127
                    79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.14E-191993IPR009057Homeodomain-like
PROSITE profilePS5007118.4153191IPR001356Homeobox domain
SMARTSM003894.3E-173395IPR001356Homeobox domain
PfamPF000466.0E-173589IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-193698IPR009057Homeodomain-like
CDDcd000861.77E-144092No hitNo description
PRINTSPR000318.6E-66271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000318.6E-67187IPR000047Helix-turn-helix motif
PfamPF021831.1E-1691131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFDEEEVYSP CASAEDLFTA MDTALSTTSR RKKTKNKRRF SDEQIKSLET MFESESRLEP  60
RKKLQLAKEL GLQPRQVAIW FQNKRARWKS KQLERDYSVL RANYNNLASR FETLKKEKQA  120
LAIQLQKLNE LIEKPREEGE CCGEQETGVN SSEGESEAKG VISSFERSRN GLGVASDEDS  180
SIKVEYFGLE EEPDNNLISM VEAADGSLTS QEDWRSLESD GLFDQSNSGS DQWWDFWA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0220090.0KF022009.1 Jatropha curcas homeobox 12 (HB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083130.11e-173homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2768e-69ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLA0A067JWT51e-172A0A067JWT5_JATCU; Uncharacterized protein
STRINGcassava4.1_014981m1e-108(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-63homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]