PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02463.30

Common Name

JCGZ_11632

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 300aa MW: 34531.2 Da PI: 4.9293

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02463.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.6	1.6e-25	135	184	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k ++ e +skyF++pi++AAkeL+v+lT+LK++CR++ I+RWPhRk+ sl Jcr4S02463.30 135 KALTRERISKYFYMPITQAAKELNVGLTLLKKRCRELDIRRWPHRKLMSL 184 789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	118	205	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-21	137	184	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAASTGFSGH NEIVSKEEDL FFATHLQLPS FDFCGNPFSL VVDWHSELSI QESFLDCHPF 60 VSDPLYASLD IGQSEDDING LGVWKELGPL FEPQKQLLLL GDTNSKDSSM GESTEEKRKV 120 KKCREEKVSN NSISKALTRE RISKYFYMPI TQAAKELNVG LTLLKKRCRE LDIRRWPHRK 180 LMSLQTLIEN LQQMKVEGKE SEEKLKEAIE ILEREKRMLE EMPDMDLEHK TKRLRQACFK 240 ANYKKRKLMG SCSSSSSGSL IATTAHDYIT ANDYQEEEED DDEEIKSLLE VPFPYDNLIF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080549.1	0.0	protein RKD1
TrEMBL	A0A067K4X8	0.0	A0A067K4X8_JATCU; Uncharacterized protein
STRING	XP_002514752.1	1e-113	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-42	RWP-RK domain-containing protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]