PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02412.10 | ||||||||
Common Name | JCGZ_09440, LOC105636572, WRKY15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 193aa MW: 21247.9 Da PI: 9.6172 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29.7 | 1.3e-09 | 172 | 192 | 1 | 21 |
---SS-EEEEEEE--TT-SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp 21 ldDgy+WrKYGqK+vk++ +p Jcr4S02412.10 172 LDDGYKWRKYGQKVVKNTLHP 192 59**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-11 | 157 | 192 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-9 | 164 | 192 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.381 | 167 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-6 | 173 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MAATSQSMLN QSGLFEEQEM PTQMGFFSFP QNLTFAQMGN CHQSLKAAGG LISVTPHHSH 60 NSVSGSTDAP SSTTTTNLTE ALLFSAAATA ANKQRDDLTS NFGGPHLLSL QRSSANLWAW 120 GEVNECLSNK RNGGDNEHHL GISAMKMKKI KARRKVREPR FCFKTMSDID VLDDGYKWRK 180 YGQKVVKNTL HPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485267 | 0.0 | KC485267.1 Jatropha curcas WRKY transcription factor 15 (WRKY15) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075270.1 | 1e-143 | probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 6e-27 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | S5CK93 | 1e-142 | S5CK93_JATCU; WRKY transcription factor 15 | ||||
STRING | cassava4.1_015466m | 3e-92 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 9e-20 | WRKY family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105636572 |
Publications ? help Back to Top | |||
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