PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02353.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22373.1 Da PI: 8.9829 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 73 | 121 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 + y+GVr+++ +g++ AeIrd + r r++lg++ taeeAa+a+ + ++++ Jcr4S02353.30 73 CSYRGVRRRP-WGKYSAEIRDpF-----RkVRVWLGTYTTAEEAAAAYRKKKEEF 121 67********.**********76.....45******************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 5.4E-36 | 2 | 193 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 2.26E-13 | 73 | 102 | No hit | No description |
Pfam | PF00847 | 1.8E-9 | 73 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-17 | 74 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.098 | 74 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-16 | 74 | 124 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-21 | 74 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MIATRKVRII CHDPDATDSS SDEDEAHINP IGAKRFVKEI NLSMLPNESR SENCPGETSN 60 GDKFKTKTRI SSCSYRGVRR RPWGKYSAEI RDPFRKVRVW LGTYTTAEEA AAAYRKKKEE 120 FDSKTAKNKL KNLSIPSKID AVEESSDFFS HPSPSSVLDV STTTTSLVHG LESSSNVEDK 180 FSRVTDFRFM GRACAFPFC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092999.1 | 1e-129 | ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A067JBK7 | 1e-128 | A0A067JBK7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_023899m | 7e-58 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13451 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-12 | ethylene response factor 110 |