PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02344.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | TCP | ||||||||
Protein Properties | Length: 190aa MW: 20867.8 Da PI: 8.3437 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.6 | 6.8e-32 | 36 | 106 | 6 | 73 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 ++ +++h+kv+gRdRR+Rl+a caar+F+L++eLG +d++tieWLl++a+p+i+++tgt+ s+ s+c Jcr4S02344.60 36 KQRKDRHSKVNGRDRRIRLPAVCAARIFQLTRELGNRTDGETIEWLLKMAEPSIIAATGTGISATvetSSC 106 6789********************************************************66555222333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-28 | 37 | 108 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.599 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGRIIEVITP PTLSPSNKKP KSISPKTSKT KLINAKQRKD RHSKVNGRDR RIRLPAVCAA 60 RIFQLTRELG NRTDGETIEW LLKMAEPSII AATGTGISAT VETSSCASNG FISPFSNGLQ 120 QMGSLDFSGS TGHFMDNNTN ISCVGEIEGL TTKNCEFPKP EQAFLPSFEF DHFVANFDME 180 LPVNDMSFPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012064757.1 | 1e-102 | transcription factor TCP15 | ||||
Swissprot | Q9FTA2 | 3e-29 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A067L6F4 | 1e-100 | A0A067L6F4_JATCU; Uncharacterized protein | ||||
STRING | XP_002529440.1 | 1e-58 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 5e-31 | TCP family protein |
Publications ? help Back to Top | |||
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