PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02196.90
Common NameJCGZ_11579, LOC105640489
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34853.1 Da    PI: 4.4235
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02196.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1986139356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Jcr4S02196.90  86 KKRRLTVDQVQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 139
                    56689************************************************9 PP
2HD-ZIP_I/II128.23.5e-4185176192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl+ +qv++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL++++++lk++ ++L ke+++L++e++
  Jcr4S02196.90  85 EKKRRLTVDQVQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQTSFNTLKADYDTLLKEKDKLKAEVN 176
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.25E-2066143IPR009057Homeodomain-like
PROSITE profilePS5007117.50881141IPR001356Homeobox domain
SMARTSM003892.7E-2084145IPR001356Homeobox domain
PfamPF000464.8E-1786139IPR001356Homeobox domain
CDDcd000861.15E-1886142No hitNo description
Gene3DG3DSA:1.10.10.609.0E-2088149IPR009057Homeodomain-like
PRINTSPR000311.3E-5112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5121137IPR000047Helix-turn-helix motif
PfamPF021837.6E-15141182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAGGGSGGS NFSVCLQSQR GPCGTSQHLD AFFLSGSSPS FLGSRSMVSF EDVNQVNGST  60
RPFFHSFDHE ENGDDELDEY FHQPEKKRRL TVDQVQFLEK SFEVDNKLEP ERKIQLAKDL  120
GLQPRQVAIW FQNRRARWKT KQLEKDYEAL QTSFNTLKAD YDTLLKEKDK LKAEVNLLAE  180
KVKERGDSEL SDKDTTSQEP PKKLVGDSTS EGEASKASFV ACKQEDMSSA KSDIFDSDSP  240
HYTDGVHSSL LEAGDSSYVF EPDQSDLSQD EEDNLSKSLL PPYVFPKLED ADYSNPESFE  300
DHAFWCWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080202.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A067K8940.0A0A067K894_JATCU; Uncharacterized protein
STRINGPOPTR_0015s07640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-47homeobox 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]