PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02163.20
Common NameJCGZ_16445, LOC105642151, WRKY04
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 477aa    MW: 52045.7 Da    PI: 8.6482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02163.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33196252360
                    -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Jcr4S02163.20 196 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 252
                    9***************************************.***************85 PP
2WRKY98.63.9e-31396453259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k ver ++dp ++++tYeg+Hnh+
  Jcr4S02163.20 396 GDGFRWRKYGQKVVKGNPYPRSYYRCTGLKCNVRKYVERVSDDPGAFITTYEGKHNHD 453
                    6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-30186253IPR003657WRKY domain
SuperFamilySSF1182907.98E-26193253IPR003657WRKY domain
SMARTSM007743.8E-37194252IPR003657WRKY domain
PfamPF031061.5E-25196250IPR003657WRKY domain
PROSITE profilePS5081123.686196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-32381455IPR003657WRKY domain
SuperFamilySSF1182904.05E-28389455IPR003657WRKY domain
PROSITE profilePS5081133.166390455IPR003657WRKY domain
SMARTSM007746.6E-36395454IPR003657WRKY domain
PfamPF031062.2E-24397453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEIKEAERVV IAKPVASRPT CSNFRSFSEL LAGAINVPPN ICSETTVPAI RPKTVRFKPM  60
TNRAPAASVS SQADLSGTAV CDSPDKVLKS EIKPTVIYKP QAKLVSKTTV SLLANMGNFN  120
ASSQQQTLPS VEARVQHPNQ EEHNFTSQLA SNFLQNIPSH APAEQTTEPP RLTSQNQEED  180
PKTLSAASNG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSLDGQIA  240
EIVYKGEHNH SKPQPPKRNS SGMQGLGIVS DGNGQDKTIA LWNNHLNERN ESSEGRVENQ  300
NDIGIPVHLT CQAKAHPSHD AAGAGPINAG AVTSDNSCGL SGECDDGGKG LEGDDDEPKS  360
KRRKNDNQSN EAGIHREAAQ EPRPVVQNST ETEIVGDGFR WRKYGQKVVK GNPYPRSYYR  420
CTGLKCNVRK YVERVSDDPG AFITTYEGKH NHDMPLRGTG SAASETNSQA PASRSKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-30196455877Probable WRKY transcription factor 4
2lex_A3e-30196455877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700150.0KC470015.1 Jatropha curcas WRKY transcription factor 04 (WRKY04) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082254.10.0WRKY transcription factor 44
RefseqXP_012082255.10.0WRKY transcription factor 44
TrEMBLM9TMC60.0M9TMC6_JATCU; WRKY transcription factor 04.1
STRINGXP_002525200.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-111WRKY family protein
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]