PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02020.40

Common Name

JCGZ_06542, LOC105629018

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 331aa MW: 36798.8 Da PI: 5.503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02020.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.1e-09	57	105	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ + E+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L Jcr4S02020.40 57 KVQKADKEKLRRDRLNEQFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 105 6677889*****************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.665	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-6	56	110	No hit	No description
Pfam	PF00010	7.6E-7	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	56	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-12	56	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-5	61	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDQWKTTIND FSQSVGEAAA VDIVPSTSPH SLPTSNSIPE SRQRQEAELK DPIAARKVQK 60 ADKEKLRRDR LNEQFLELGN TLDPDRPKND KATILTDTIQ MLKDLTAEVS RLKDEYTALS 120 EESRELMQEK NELREEKASL KSDIENLNAQ YQQRVRVMFP WPVADPSVVM GPTYSYPVPV 180 PVPPSPIPMH VSLQPFPLFG NQNPAAIPTP CSNFIPYPTP VNPTNEQTSV QYASTSHISS 240 KQESKSKSVD HPRSSNAERC DDSNDVGTEL ELKMPGSSTQ QDMSSGERKG KQLQRKERNS 300 RNGSSTSRYS SSHGVQDSSS NSIGDIPKSS D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065925.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	5e-79	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A067LQD4	0.0	A0A067LQD4_JATCU; Uncharacterized protein
STRING	cassava4.1_011554m	1e-170	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-77	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105629018

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]