PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01994.90
Common NameJCGZ_12445, LOC105639758, WRKY41
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 342aa    MW: 37580.4 Da    PI: 9.9928
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01994.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31271328359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Jcr4S01994.90 271 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLVVTYEGQHNHS 328
                    99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-18222267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32258328IPR003657WRKY domain
PROSITE profilePS5081130.779264330IPR003657WRKY domain
SuperFamilySSF1182906.93E-27267328IPR003657WRKY domain
SMARTSM007747.7E-38269329IPR003657WRKY domain
PfamPF031066.8E-27271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAVELMMSYR NENFISKMEE SVVQEAASGL ESVNKLIRLL SQKNQEKDQP SSSSPPSSRS  60
SMDNMDMDCK AVADVAVSKF KKVISLLGRT RTGHARFRRA PVSNPLNNSN TNNYNNQVTQ  120
ENNQILESKV YYATPIQQIP PLPPPPPPQY FSSVVIPNDN SNNNGVISER KESSTTINFS  180
YSSAANSFLS SLTGDTTDSK QLSSSSAFQI AGGKPPISSS LKRKCSSETL GSGKCGSSSG  240
RCHCSKKRKL RLKRVVRVPA ISLKLADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG  300
CPARKHVERA LDDPTMLVVT YEGQHNHSLS IAETTNLILE SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21257329273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852930.0KC485293.1 Jatropha curcas WRKY transcription factor 41 (WRKY41) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079295.10.0probable WRKY transcription factor 15 isoform X2
SwissprotQ9STX03e-89WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLS5CFU20.0S5CFU2_JATCU; WRKY transcription factor 41
STRINGcassava4.1_011062m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-46WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]