PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01938.10

Common Name

JCGZ_16039

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 328aa MW: 36662.7 Da PI: 4.7973

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01938.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.5e-11	254	294	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Jcr4S01938.10 254 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAVHYVKFLQ 294 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.72E-14	244	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.983	244	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-12	249	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.30E-12	253	298	No hit	No description
Pfam	PF00010	5.0E-8	254	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MNMESLAAFP DGEWDFSRMF STEDQLDFTS ELHFTNPSGF PLSNPEANES LFYSWNTLNP 60 YLHFISQENS SSSNSSSTSI LPSPNHQNHL FNNFPATNDI STSMDFCIMD ERNPGSFLAM 120 YPEVAMAEMG NLDENQPPGA DAVSAKESQL KRKFDVSELE VNPSDSAKKK TRVTKDVQKS 180 NRNVKSNKNR KLITPNCNPE EEINAGPDVQ ASSSCSSDGE NASQDSNDCK TLNSNGKTRA 240 SRGSATDPQS LYARKRRERI NERLRILQTL VPNGTKVDIS TMLEEAVHYV KFLQLQIKLL 300 SSDDLWMYAP IAYNGMDIGL NQKISMLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068392.2	0.0	transcription factor bHLH84
TrEMBL	A0A067KZM4	0.0	A0A067KZM4_JATCU; Uncharacterized protein
STRING	cassava4.1_025628m	1e-124	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	1e-46	bHLH family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]