PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01829.40
Common NameJCGZ_14162
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 363aa    MW: 40978.7 Da    PI: 4.9758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01829.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1385.9e-43221493128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    +GfrFhPtd el +++L++k++g+  +    i++++++++ePwd+p  ++ ++e++ wyfF++rd ky +++r+nr+tk gyWk tgk ++v++k 
  Jcr4S01829.40  22 VGFRFHPTDYELTNYFLRRKISGHGDNG-MQIPDIKVCDYEPWDIPglMNSNSEDQVWYFFCPRDYKYLRSSRSNRTTKVGYWKPTGKPRKVKDKh 116
                    7************************887.56***************53355668889************************************997 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    k++++g+k++Lvfyk+++pk+++t+W+mhey +
  Jcr4S01829.40 117 KKKEIGTKRSLVFYKKDSPKATRTKWIMHEYDI 149
                    7788***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4512161IPR003441NAC domain
PROSITE profilePS5100541.88620175IPR003441NAC domain
PfamPF023652.0E-2522148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKHESSSAMA SPELIEPRNW VVGFRFHPTD YELTNYFLRR KISGHGDNGM QIPDIKVCDY  60
EPWDIPGLMN SNSEDQVWYF FCPRDYKYLR SSRSNRTTKV GYWKPTGKPR KVKDKHKKKE  120
IGTKRSLVFY KKDSPKATRT KWIMHEYDIQ GNFVLCKLKF KPDAEKALIV AASNAASPSD  180
IESLKLTEMT SNSSCDECEP SIVVASPNEM TAMSTYVNDK LISSPTRDFE NQNPNKVNDI  240
SVSDGGEWSF LAPTSPDSGN QNQRENTDMS TSSIVSNLDN NASENTPLEV DLQDCFKKLE  300
ALLELEEDNR FISAFFQPTS RSESGSYTTS FDASVFGGVG SEMEWANEDG VYWPCTCTGA  360
SVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-262314918140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753500.0KC775350.1 Jatropha curcas NAC transcription factor 072 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538516.10.0protein NTM1-like 9
TrEMBLR4N7S40.0R4N7S4_JATCU; NAC transcription factor 072
STRINGXP_002515116.16e-91(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-43NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]