PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01755.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 108aa MW: 12649.1 Da PI: 10.71 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.5 | 1.6e-27 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifss+gklye++ Jcr4S01755.20 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFA 58 8***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.048 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.75E-34 | 2 | 63 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-28 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS SGKLYEFANT 60 RFDIYQYKFS FICYMKLLLK SSYLFGKFSK FYTFRIFTSS CKKLLYSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6byy_B | 9e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6byy_C | 9e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6byy_D | 9e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_A | 8e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_B | 8e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_C | 8e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
6bz1_D | 8e-19 | 1 | 63 | 1 | 63 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020537190.1 | 4e-35 | MADS-box transcription factor 23 isoform X2 | ||||
Swissprot | Q9SZJ6 | 6e-33 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A067K7F5 | 1e-33 | A0A067K7F5_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A1R3K3J7 | 2e-35 | A0A1R3K3J7_9ROSI; Transcription factor, MADS-box | ||||
TrEMBL | A0A2C9UVZ9 | 2e-35 | A0A2C9UVZ9_MANES; Uncharacterized protein | ||||
STRING | XP_007158334.1 | 3e-34 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 3e-35 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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