PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01613.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 210aa MW: 23605.2 Da PI: 4.85 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 50.8 | 3.3e-16 | 55 | 97 | 19 | 59 |
SS-E.EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 19 efpr.sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++ r sYYrC+s gC ++k+vers++dp++++i Y+geH h Jcr4S01613.20 55 KTVRgSYYRCSSLkGCLARKQVERSSSDPSIFIINYTGEHSHA 97 444438*****998****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 3.66E-13 | 54 | 99 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.9E-15 | 54 | 99 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-12 | 55 | 96 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-9 | 55 | 98 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.316 | 60 | 99 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVEAFFGECS YQLPKEQNRE RECSYQLLKA DNIDHWAAHS GRGLLGGLQS LPENKTVRGS 60 YYRCSSLKGC LARKQVERSS SDPSIFIINY TGEHSHAHPT RRNSLAGSTR IKSTMAKQAV 120 AINEPNNMQN IKKDETFPSS STTPSMTSTE EDQLMQNVRI KNEEEEQVLD DGGSNEIPMQ 180 DIVFTDDMFP SLEDFEGLFN MDHQFAATVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485297 | 0.0 | KC485297.1 Jatropha curcas WRKY transcription factor 45 (WRKY45) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087205.1 | 1e-107 | probable WRKY transcription factor 27 isoform X1 | ||||
TrEMBL | S5CFU9 | 1e-108 | S5CFU9_JATCU; WRKY transcription factor 45 | ||||
STRING | cassava4.1_028977m | 1e-60 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-24 | WRKY family protein |