PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01509.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GeBP

Protein Properties

Length: 403aa MW: 45127.9 Da PI: 4.4187

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01509.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120.6	8.3e-38	124	218	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++d+++++g++ ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgk++sf+++hdq +fe+s+kiW Jcr4S01509.50 124 LFQRLWTDEDEIELLQGFLDYTTQRGTN-HHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLTKISSGKDFSFKSPHDQATFEISRKIWS 218 79**********************76.89**************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-35	125	218	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MASGQDDTVF DHDLDDDDES SQSQDDDDDL ENDMVENDDV LADEEDEEDL NSVSPSTSSP 60 AAVPVAVPSA SVVTIAVPNG SDPPTGSMDS APDPKRQRVE TTLVIQRPEE KKPQPQQIDE 120 SRRLFQRLWT DEDEIELLQG FLDYTTQRGT NHHDTALFYD QIKSKLQLDF NKNQLVEKLR 180 RLKKKYRNVL TKISSGKDFS FKSPHDQATF EISRKIWSAT GKIGVEDGNL DDEDGNPNPN 240 LPNFNDGEIK IEDQKSTPRS RKRSRPRPST AAAAAAASVK VEDKRLPNEA FVTNVDNNNT 300 NNIIHNTNNV NVSSLIEETM RSCLSPLFKE LMSNLMVAGP CSGRGIGGLA MNAMPLSFGG 360 GEMMMDEKWR KQQILELEVY SKRLELVQDQ IRSQLEELRS MGR

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MASGQDDTVF DHDLDDDDES SQSQDDDDDL ENDMVENDDV LADEEDEEDL NSVSPSTSSP  60
AAVPVAVPSA SVVTIAVPNG SDPPTGSMDS APDPKRQRVE TTLVIQRPEE KKPQPQQIDE  120
SRRLFQRLWT DEDEIELLQG FLDYTTQRGT NHHDTALFYD QIKSKLQLDF NKNQLVEKLR  180
RLKKKYRNVL TKISSGKDFS FKSPHDQATF EISRKIWSAT GKIGVEDGNL DDEDGNPNPN  240
LPNFNDGEIK IEDQKSTPRS RKRSRPRPST AAAAAAASVK VEDKRLPNEA FVTNVDNNNT  300
NNIIHNTNNV NVSSLIEETM RSCLSPLFKE LMSNLMVAGP CSGRGIGGLA MNAMPLSFGG  360
GEMMMDEKWR KQQILELEVY SKRLELVQDQ IRSQLEELRS MGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089211.1	0.0	probable transcription factor At3g04930
Swissprot	F4K5T4	1e-94	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A067JI48	0.0	A0A067JI48_JATCU; Uncharacterized protein
STRING	cassava4.1_008694m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	4e-58	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]