PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01479.60
Common NameJCGZ_08728, LOC105635785
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17824.4 Da    PI: 9.8451
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01479.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.1e-151564149
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEEE-TTSEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevaviifsstgklyey 49
                   k+ie+k   ++ f+kRr+g++KKA E ++ C +a++ vi fs+ g+ + +
  Jcr4S01479.60 15 KKIESKHHLKTAFTKRRKGLFKKADEFCTVCnGANATVITFSPYGRPHAF 64
                   68*****************************559*********9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.185768IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-20767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-19882IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-7929IPR002100Transcription factor, MADS-box
PfamPF003192.5E-161664IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-72944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAGKRGTGRK KIEIKKIESK HHLKTAFTKR RKGLFKKADE FCTVCNGANA TVITFSPYGR  60
PHAFGKPNPD TVIDRFLNEN SNSSVARDTQ SSILEEETRG DEFNWWEESV EGMDMNELLK  120
FRISLMELMK NVVYRLEDMQ MRRVALRNFL SQDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074276.11e-113agamous-like MADS-box protein AGL61
TrEMBLA0A067KW581e-111A0A067KW58_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-24AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]