PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01479.30

Common Name

JCGZ_08730, LOC105635787

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

YABBY

Protein Properties

Length: 163aa MW: 18386.9 Da PI: 9.4623

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01479.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	173.1	1.8e-53	7	160	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 sse Cyv+CnfCnt lav+vP++ + +vvtv+CGhC++lls+n + + q++++++hl++ k+++l+++ l++ +++ ++ s l Jcr4S01479.30 7 SSECFCYVHCNFCNTNLAVNVPNNIVCNVVTVKCGHCSNLLSLNTTAM-QQTTTHHHLQNVHKQNVLHQD------LNERSLSSKDNEVS----VL 91 78999***********************************997655.555666776665554443322......22222222222222....23 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ e +r+ + krqr Psayn+fikeei+rika+nP+ishreafs+aaknWah+P+ fgl Jcr4S01479.30 92 VFPSQSERSRTLSAHAAIGKRQRPPSAYNKFIKEEIRRIKANNPKISHREAFSTAAKNWAHLPHTQFGL 160 3344555666667788889**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.6E-58	7	160	IPR006780	YABBY protein
SuperFamily	SSF47095	2.75E-9	107	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-6	111	156	IPR009071	High mobility group box domain
PROSITE profile	PS50118	8.77	112	163	IPR009071	High mobility group box domain
CDD	cd01390	1.55E-6	114	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MSLENISSEC FCYVHCNFCN TNLAVNVPNN IVCNVVTVKC GHCSNLLSLN TTAMQQTTTH 60 HHLQNVHKQN VLHQDLNERS LSSKDNEVSV LVFPSQSERS RTLSAHAAIG KRQRPPSAYN 120 KFIKEEIRRI KANNPKISHR EAFSTAAKNW AHLPHTQFGL TLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074281.1	1e-116	protein YABBY 2
Swissprot	Q10FZ7	1e-46	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A067KIN0	1e-117	A0A067KIN0_JATCU; Uncharacterized protein
STRING	POPTR_0016s06760.1	3e-66	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-37	YABBY family protein

Link Out ? help Back to Top
Entrez Gene	105635787

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]