PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01359.50 | ||||||||
Common Name | JCGZ_15970, LOC105630792 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 271aa MW: 30034 Da PI: 7.9165 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 121 | 175 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Jcr4S01359.50 121 RKKLRLTKQQSAILEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTK 175 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.5 | 1e-39 | 121 | 209 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eL+ + Jcr4S01359.50 121 RKKLRLTKQQSAILEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELK-S 209 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.346 | 117 | 177 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-17 | 119 | 181 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-18 | 119 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.61E-16 | 120 | 178 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 121 | 175 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.0E-17 | 121 | 175 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 152 | 175 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.9E-9 | 177 | 210 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.6E-22 | 177 | 220 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGFGISDHSV CNTGLGLGLI SCCHDKQEKN CSQSDHLHQE KKKKISLKYD HMFPSLTLGP 60 PFEAYTKIEA DLQPQASSPS AVSSFSNSSV KKEREFGGGE EVEVERVSSR ISDEDEEGSP 120 RKKLRLTKQQ SAILEDSFKE HSTLNPKQKQ ALAEQLNLRP RQVEVWFQNR RARTKLKQTE 180 VDCELLKKCC ETLTEENKRL QKELQELKSL KLTAPLYMQL PAATLTMCPS CERIGSGGDG 240 GGSSSTSTLT VGPKPPHFYT TASFTHPSAA C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 177 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068141.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 6e-81 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A067L2U6 | 0.0 | A0A067L2U6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014073m | 1e-135 | (Manihot esculenta) | ||||
STRING | cassava4.1_026976m | 1e-135 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-58 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105630792 |
Publications ? help Back to Top | |||
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