PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01309.50 | ||||||||
Common Name | JCGZ_13298, LOC105639333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 39046.7 Da PI: 7.4138 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 87 | 112 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f+ G C+ G++C+FaHg+ Jcr4S01309.50 87 FKTRMCAKFRS-GNCRNGENCNFAHGM 112 69999999988.*************95 PP | |||||||
2 | zf-CCCH | 29.6 | 1.2e-09 | 152 | 175 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H Jcr4S01309.50 152 KMKLCKKFYNGEECPYGDRCNFLH 175 789*******66************ PP | |||||||
3 | zf-CCCH | 42 | 1.5e-13 | 237 | 263 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ Jcr4S01309.50 237 WKTKLCTKWETTGQCPFGEKCHFAHGQ 263 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-15 | 82 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-8 | 84 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.122 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-5 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-9 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-17 | 233 | 267 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-10 | 235 | 267 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.535 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-11 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSYNDSQPPF MSAQPPYQSG TDAIGIWPQF PLNSNEQFDP HSQFEQHQPP YKRPRNSEDN 60 NSQSMNSRMP LPNNLPVNNK GTTNIFFKTR MCAKFRSGNC RNGENCNFAH GMQDLRQPPP 120 NWQELVGVGG GVRGEDERPS GNWEDDQRII HKMKLCKKFY NGEECPYGDR CNFLHEDPSK 180 FRDDIGRFRE SSAISIGTTG QPMLHGSGGL NAPEVSKSVN NVVSDAFRVN DMKPVYWKTK 240 LCTKWETTGQ CPFGEKCHFA HGQAELQLPG ERAEGEVGNA GCTLTKPPPI HANNICPSMT 300 ANVSSVIEEG QGKKCLLKWK GPKKINRIYG DWLDDLPLVQ NLTNQVES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012078744.1 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_020537136.1 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 4e-99 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A067KBJ1 | 0.0 | A0A067KBJ1_JATCU; Uncharacterized protein | ||||
STRING | XP_002524459.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-91 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105639333 |
Publications ? help Back to Top | |||
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