PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01293.40 | ||||||||
Common Name | WRKY57 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 238aa MW: 27028.9 Da PI: 4.2125 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 39.8 | 9.3e-13 | 95 | 136 | 21 | 59 |
-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 sY+rCt++ gC+++k+v++ +edpk+ +tY g+H+++ Jcr4S01293.40 95 GESYFRCTHKydqGCKATKQVQKMEEDPKMYRTTYIGQHTCR 136 579******99999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.1E-10 | 86 | 137 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-11 | 95 | 136 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-13 | 96 | 136 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-13 | 96 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.118 | 97 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGTSLPENVP STNREKVGEE LLHGQEFATQ LQFLLKGPCG DLLLADELVV KILRSFNEAL 60 SLLSSCEFLE NSQNLITTSQ VDSVCCDDRR SEDSGESYFR CTHKYDQGCK ATKQVQKMEE 120 DPKMYRTTYI GQHTCRDILK VPQIITSTTQ DSYPWESYML SSDSKIPITP TYNATTIKQE 180 YKEATTPSDL TDNLPSSDTG MWWKGFESTA SQSLDMDFVD FDSDFHFDET EFNYLSAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-14 | 96 | 136 | 29 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485309 | 0.0 | KC485309.1 Jatropha curcas WRKY transcription factor (WRKY57) gene, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091128.1 | 1e-169 | probable WRKY transcription factor 70 isoform X2 | ||||
TrEMBL | S5CFW3 | 1e-168 | S5CFW3_JATCU; WRKY transcription factor 57.1 | ||||
STRING | cassava4.1_012154m | 1e-79 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4700 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 5e-26 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Entrez Gene | 105649166 |
Publications ? help Back to Top | |||
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