PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01293.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 310aa    MW: 34732.2 Da    PI: 8.3009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01293.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.22.9e-27161222259
                    --SS-EEEEEE.E--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGq.KevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGq K++ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp+++e+tY+g+H+++
  Jcr4S01293.30 161 EDGYTWRKYGQeKKILGSRFPRGYYRCTHQklyQCPAKKQVQRLDDDPHTFEVTYRGDHTCH 222
                    7*********9899****************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-26156223IPR003657WRKY domain
SuperFamilySSF1182902.09E-23157223IPR003657WRKY domain
SMARTSM007743.1E-34160223IPR003657WRKY domain
PfamPF031066.1E-25161222IPR003657WRKY domain
PROSITE profilePS5081118.693161224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDEFISLILH GIQLSKELEP TLQNLANKQE IMLSKLDEII RVFVTARERL NAQDPSSYSQ  60
MLFRESQQPH QVDPSLREYW LKSKMMEMLQ TQLIADQRSS GSGGLEMGSP SGGLAMEIAS  120
KSDVQAVASS SQRPRRRKDD AEKKTIRVPA PRMGNTEIPP EDGYTWRKYG QEKKILGSRF  180
PRGYYRCTHQ KLYQCPAKKQ VQRLDDDPHT FEVTYRGDHT CHMSSTAPSV PPLQITQEMT  240
QNMATQPPAW LEFTLGGGGG RGSGSGAGPS TARFGKEAEY PVADMADAMF NSGKTVDSNR  300
HGIDFYCYGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17161221968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137PRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853070.0KC485307.1 Jatropha curcas WRKY transcription factor 55 (WRKY55) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091129.10.0WRKY transcription factor 55
TrEMBLS5CH760.0S5CH76_JATCU; WRKY transcription factor 55
STRINGcassava4.1_023169m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-63WRKY DNA-binding protein 55