PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01223.60
Common NameJCGZ_15802, LOC105630979
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 291aa    MW: 32490.4 Da    PI: 8.5395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01223.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-06132151120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C k+F+r  nL+ H+
  Jcr4S01223.60 132 FSCHVCFKTFNRYNNLQMHM 151
                    89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.29E-5125154No hitNo description
PROSITE profilePS5015710.055132159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-4132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEMESCYSFC NTNNPLVDAD ASSSSCSAAS SSSSASSSSN RSDNNKQTDI EPLDLFPRST  60
YNSVEPQPIF SENPRTILSR DGDKEEVTVA LQIGLPNYTS HSSIDSNTNS NNADKQYWIP  120
TPEQILVGLT HFSCHVCFKT FNRYNNLQMH MWGHGSQYRG GPESLKGSQP RVMLGIPCYC  180
CAEGCRNNIQ HPKAKPLKDF RTLQTHYKRK HGLKSFMCRK CGKFLAVKGD WRTHEKNCGK  240
RWLCICGSDF KHKRSLKDHI KAFGSGHGPF LTTSFDGNGI QLLGDNSNTL V
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068367.10.0protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-109TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A067LA610.0A0A067LA61_JATCU; Uncharacterized protein
STRINGcassava4.1_023114m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]