PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S01222.10 | ||||||||
Common Name | JCGZ_19927, LOC105644191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 190aa MW: 22282.2 Da PI: 5.6933 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.2 | 1.8e-28 | 6 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 lp G+rF+Ptd+el+ +yLk+k+ gk+l++ ++i+++d+++++P +Lp +++++ +e yfFs+r+k r t++g+ + + ++ +++ Jcr4S01222.10 6 LPSGYRFRPTDSELILYYLKNKILGKELPV-NIIPTIDVFSCNPDQLPlSEFTHgMPNERYFFSNRRK--------GRiLTEDGFYHVS-STGSIY 91 699***************************.89***************655444145599***99854........565899***9966.5689** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k++lvg +tL fy+gr +kg k++W++he+r+ Jcr4S01222.10 92 D-KNKLVGFVRTLDFYHGRPNKGIKSKWTVHEFRV 125 9.899****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-32 | 2 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.858 | 6 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-17 | 7 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MEQLVLPSGY RFRPTDSELI LYYLKNKILG KELPVNIIPT IDVFSCNPDQ LPLSEFTHGM 60 PNERYFFSNR RKGRILTEDG FYHVSSTGSI YDKNKLVGFV RTLDFYHGRP NKGIKSKWTV 120 HEFRVNPQVF QEDEDAQENI LNSVACKIIH KLETSTSQIK EKIKIIDLEF EDEEESEMEN 180 VLSRDNKFRE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-18 | 3 | 125 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC775331 | 1e-141 | KC775331.1 Jatropha curcas NAC transcription factor 053 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084854.1 | 1e-139 | NAC domain-containing protein 41 | ||||
TrEMBL | R4NFY8 | 1e-138 | R4NFY8_JATCU; NAC transcription factor 053 | ||||
STRING | XP_002526101.1 | 6e-52 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14452 | 7 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-28 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105644191 |
Publications ? help Back to Top | |||
---|---|---|---|
|