PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01122.10
Common NameJCGZ_20363
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 482aa    MW: 54161.5 Da    PI: 8.4641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01122.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14314359454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ Le Av YIk+L
  Jcr4S01122.10 314 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLEDAVTYIKDL 359
                    799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-4523208IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.15E-15309363No hitNo description
SuperFamilySSF474599.95E-19309374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.809310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-12314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17314379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-17316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSPTSSSSLL SFCQEPPHPL PIQQRLQYIL QNHPEWWLYA IFWQASKDAS GRLVLSWGDG  60
SFRGSNKDFA ATRPNKHNQF KFGFQLERKR SSVNKDQLQY LFSENVDLDR LGDVDVTEDD  120
WFYTVSVTRS FSVGDGILGR AFITPSGFIW LSGDRDLQLY ECERVKEASM HGIKTLACIS  180
TSCGVVELGS FNTINEDWSL VQLCKSIFGA DVACLISKQP THQLPNIPEG SNSSFLDIGI  240
SGAHRQKDTS SDKHNQNEGN MMLIKKDNAT GQLGRSSSDS GPCDSDGKFA PGSTVDRFKK  300
RGRKPINGKE LPLNHVEAER QRRERLNHRF YALRSVVPNV SKMDKASLLE DAVTYIKDLK  360
AKVNELETKL QAVRKKSKNV TNINANTNNY VVIGPEVMSH NKVMTMEVDV KIVGSEAMIR  420
VQSLDVNYPA ARLMDALREL EIKVHHASVS RIKEMVLLDV VIRLPDGLTN EEITRTAILQ  480
RM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-26212088192Transcription factor MYC3
4rqw_B8e-26212088192Transcription factor MYC3
4rs9_A8e-26212088192Transcription factor MYC3
4yz6_A8e-26212088192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086610.10.0transcription factor MYC2
TrEMBLA0A067JMY50.0A0A067JMY5_JATCU; Uncharacterized protein
STRINGcassava4.1_024442m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-52bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]