PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01003.10
Common NameJCGZ_14204, LOC105642791
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 482aa    MW: 54003.9 Da    PI: 5.1499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01003.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12310355454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Jcr4S01003.10 310 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVCYINEL 355
                    799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-5226206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.533306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17307370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-13309359No hitNo description
PfamPF000102.2E-9310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15310370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-15312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEDLIISPSS SSSLISLSQD NSQLCLQQRL QFLLQGQSDR WSYAIFWQTS NDDNGRIFLA  60
WGDGHFQSSR QTPPKLTTIN NRIPAINSGE RKIAMKGIHA LFGNNNDIDC SMMDDTNAEW  120
FYVMSLTRSF SAGEGIPGKV LSTGSLVWLT GAQELRYYNC ERAKEAQMHG LETLVCIPTY  180
NGVLELGSCD VIRENWGLVQ EAKSLFGSDL VDLMPKNPNT NSASIQLLDM NISFADIGLI  240
AGAQDQEASL EQKAQQTNYE AKKDIDKPGQ CYIDSEHSDS DCPLVAPTVE KRTPKKRGRK  300
PSLGRETPLN HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLSDAVC YINELKAKID  360
ELDSQLQRDQ SKRVKLEVTD NTDNQSTITS VDQARPSPIS GFTLDIEVKI LGDDAMIRVQ  420
SENVNYPAAK LLTALRDLEF QVHHASMSTV NELMLQDVVV RVPDGFRTEE GMKNALLRRL  480
EQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-33262069192Transcription factor MYC3
4rqw_B6e-33262069192Transcription factor MYC3
4rs9_A6e-33262069192Transcription factor MYC3
4yz6_A6e-33262069192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083125.10.0transcription factor MYC2
TrEMBLA0A067K0560.0A0A067K056_JATCU; Uncharacterized protein
STRINGEOX956140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-79bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]