PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00850.20

Common Name

JCGZ_16760, LOC105628702

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 731aa MW: 79177.4 Da PI: 6.505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00850.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Jcr4S00850.20 309 PCPDFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	6.84E-19	6	137	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.41E-16	9	135	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.6E-18	9	135	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	250	10	40	IPR002110	Ankyrin repeat
Pfam	PF12796	5.5E-11	18	124	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.502	57	133	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.3E-4	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.701	92	127	IPR002110	Ankyrin repeat
SMART	SM00248	5.1E-4	92	124	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	304	330	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	309	331	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-5	309	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-4	309	331	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-4	337	367	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.033	339	363	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	21	339	362	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MNHLTVETED SFSSLLEFAA NNDVEGFKHL IERDASSIDE VGYWYGRQKG SKNIVLDHRT 60 PLMVAATYGS LDVLKFILTH TDADVNLLCG MDKTTALHCA ASGGSKNAVE AVKLLLSAGA 120 DLNCLDASGY RPVDVIVVPP KLYGMRGTLK DLLSNSVSNG SLAENNCNGS VGEPNCNGSV 180 GKHTSNGSAG ECNLRVSIST SSTSSPTLSS SPENGSPPSP SVLVSSPLAS KYNDMPSSTT 240 SEKKEYPIDP SLPDIKNSIY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH 360 TPEELRPLYV STGSAVPSPR TSASAASVMD MAAALSLLPG SPSSVSAMSP SPFNQPMSPT 420 ASSISHSSLA WPQPNVPTLH LPASNLQSSR LRSSLSARDI PPEDLNLLSD FDAQQQILND 480 LTCFSQSRNN SASLNRSGRS KTLTPSNLEE LFSAEISSPR YSDQAAAVFS PTHKSAVLNQ 540 FQQQQSMLSP INTSVFSPKN VDHPLLQASF GMGSPGRMSP RSVEPISPMG SRLSAFVQRE 600 KQHQQLRSLS SRDLGSNNPA ASIVESPVNS WTKWGSPNGK LDWSINGGDE LGHLRRSSSF 660 ELGNNGEEPD LSWVQSLVKE SPPEMLKEKF GVPVSGAASS GEGLNPSSQI DSVLESWLEQ 720 MQIDQQQQLV V

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MNHLTVETED SFSSLLEFAA NNDVEGFKHL IERDASSIDE VGYWYGRQKG SKNIVLDHRT  60
PLMVAATYGS LDVLKFILTH TDADVNLLCG MDKTTALHCA ASGGSKNAVE AVKLLLSAGA  120
DLNCLDASGY RPVDVIVVPP KLYGMRGTLK DLLSNSVSNG SLAENNCNGS VGEPNCNGSV  180
GKHTSNGSAG ECNLRVSIST SSTSSPTLSS SPENGSPPSP SVLVSSPLAS KYNDMPSSTT  240
SEKKEYPIDP SLPDIKNSIY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH  360
TPEELRPLYV STGSAVPSPR TSASAASVMD MAAALSLLPG SPSSVSAMSP SPFNQPMSPT  420
ASSISHSSLA WPQPNVPTLH LPASNLQSSR LRSSLSARDI PPEDLNLLSD FDAQQQILND  480
LTCFSQSRNN SASLNRSGRS KTLTPSNLEE LFSAEISSPR YSDQAAAVFS PTHKSAVLNQ  540
FQQQQSMLSP INTSVFSPKN VDHPLLQASF GMGSPGRMSP RSVEPISPMG SRLSAFVQRE  600
KQHQQLRSLS SRDLGSNNPA ASIVESPVNS WTKWGSPNGK LDWSINGGDE LGHLRRSSSF  660
ELGNNGEEPD LSWVQSLVKE SPPEMLKEKF GVPVSGAASS GEGLNPSSQI DSVLESWLEQ  720
MQIDQQQQLV V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065564.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A067L895	0.0	A0A067L895_JATCU; Uncharacterized protein
STRING	cassava4.1_002316m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Entrez Gene	105628702

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]