PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00845.50
Common NameJCGZ_14602, LOC105643198
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 294aa    MW: 32655.5 Da    PI: 8.5003
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00845.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-18134188256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Jcr4S00845.50 134 RKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 188
                    788899***********************************************98 PP
2HD-ZIP_I/II125.91.8e-40134223191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  Jcr4S00845.50 134 RKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTQENRRLQKEVQELR-AL 223
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.2E-341103IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.4E-19113188IPR009057Homeodomain-like
SuperFamilySSF466892.1E-19118191IPR009057Homeodomain-like
PROSITE profilePS5007117.329130190IPR001356Homeobox domain
SMARTSM003891.6E-15132194IPR001356Homeobox domain
PfamPF000461.4E-15134188IPR001356Homeobox domain
CDDcd000866.32E-14134191No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
SMARTSM003403.6E-26190233IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-11190224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGEKDDGLGL GLSLGFGGTT QQNQSSLKLN LMPFPSQFMQ NNHLRTSLND LFQSSDKNSD  60
ARSFQRGIDM NRIPTVVDCD DETGVSSPNS TISSISGKRS EREHIGEEAE AERTSCSHGG  120
SDDEDGGAGG DASRKKLRLS KEQSLVLEET FKEHNTLNPK QKLALAKQLN LRPRQVEVWF  180
QNRRARTKLK QTEVDCEYLK RCCENLTQEN RRLQKEVQEL RALKLSPQLY MHMNPPTTLT  240
MCPSCERVAV SSSSSSAAAS STALTRHPVN SHPQRPVPIK PWAALPNQHP ASRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138SRKKLRL
2182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083669.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-110HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A067JXY90.0A0A067JXY9_JATCU; Uncharacterized protein
STRINGPOPTR_0014s04460.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-72homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]