PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00795.90

Common Name

GRAS33, JCGZ_17897

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 467aa MW: 52965.7 Da PI: 7.8172

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00795.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	49.7	6.7e-16	116	212	1	95
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 lv++L++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++L+ rl+ ++ + +++s++++ + +se+ al+lf+e+ P ++f+ Jcr4S00795.90 116 LVQQLISCAEAVACRDKTHASALLSELRANALVFGTSFQRVASCFVQGLSDRLVLVQPLGAVGISASPAKTITsfTSEKDEALRLFYEILPQIQFG 211 689************************************************9955544444444444444456999999************8 PP GRAS 95 h 95 Jcr4S00795.90 212 M 212 5 PP
2	GRAS	251.7	2.9e-77	214	465	117	374
GRAS 117 fdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlvakrledleleeLrvkpgEalaVnlvlq 209 +++ qG QW +L++ La+ + ++p +lRiTgvg+ s e+le++g+ L+ +A+ +g ++ef v+++le+l+ e+++v gE++++n++lq Jcr4S00795.90 214 LGLPQGQQWRNLIHRLANNSsaNPPKRLRITGVGN----SGERLEAIGNELECYARCMGFnNLEFLY-VESSLENLKAEDFKVLDGEVVIINSILQ 304 57789**********888656777*****....****************84599999.799********************* PP GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 lh +++es + +vL+ + +lsPkvv++veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E++++++ei+n+v+ceg++r Jcr4S00795.90 305 LHCVVKESRGALN---SVLQKLHELSPKVVILVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFFFAEEIKNIVSCEGQAR 397 *88877777...8*************************************************************************** PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +erhe+l +Wr+r+++aGF+p+p+++ +qak l++ k +gy+v ee+ +lvlgWk++p+v++S+W+ Jcr4S00795.90 398 VERHERLDQWRRRMSRAGFQPAPIKKI--AQAKQWLANAKiCEGYTVTEEKSCLVLGWKSKPIVAASCWK 465 ********************975..599999999999**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.544	90	446	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-13	116	212	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.9E-75	214	465	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MPSPLYVQSE FCTDHRSDEN KRLDLNLCHS MPKFSMLDNK RPAWFDLDEK RRYKRVKQEP 60 STNSLSTLSR LHFRDYIWAY TERYLAIEAM EEATAAMVVS DKNEVKEEEG SDGMKLVQQL 120 ISCAEAVACR DKTHASALLS ELRANALVFG TSFQRVASCF VQGLSDRLVL VQPLGAVGIS 180 ASPAKTITSF TSEKDEALRL FYEILPQIQF GMSLGLPQGQ QWRNLIHRLA NNSSANPPKR 240 LRITGVGNSG ERLEAIGNEL ECYARCMGFN NLEFLYVESS LENLKAEDFK VLDGEVVIIN 300 SILQLHCVVK ESRGALNSVL QKLHELSPKV VILVEQDSSH NGPFFLGRFM EALHYYSAIF 360 DSLDAMLPKY DTRRAKIEQF FFAEEIKNIV SCEGQARVER HERLDQWRRR MSRAGFQPAP 420 IKKIAQAKQW LANAKICEGY TVTEEKSCLV LGWKSKPIVA ASCWKCS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MPSPLYVQSE FCTDHRSDEN KRLDLNLCHS MPKFSMLDNK RPAWFDLDEK RRYKRVKQEP  60
STNSLSTLSR LHFRDYIWAY TERYLAIEAM EEATAAMVVS DKNEVKEEEG SDGMKLVQQL  120
ISCAEAVACR DKTHASALLS ELRANALVFG TSFQRVASCF VQGLSDRLVL VQPLGAVGIS  180
ASPAKTITSF TSEKDEALRL FYEILPQIQF GMSLGLPQGQ QWRNLIHRLA NNSSANPPKR  240
LRITGVGNSG ERLEAIGNEL ECYARCMGFN NLEFLYVESS LENLKAEDFK VLDGEVVIIN  300
SILQLHCVVK ESRGALNSVL QKLHELSPKV VILVEQDSSH NGPFFLGRFM EALHYYSAIF  360
DSLDAMLPKY DTRRAKIEQF FFAEEIKNIV SCEGQARVER HERLDQWRRR MSRAGFQPAP  420
IKKIAQAKQW LANAKICEGY TVTEEKSCLV LGWKSKPIVA ASCWKCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-46	102	464	3	377	Protein SCARECROW
5b3h_D	6e-46	102	464	3	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405282	0.0	KM405282.1 Jatropha curcas GRAS33 protein (GRAS33) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085888.1	0.0	DELLA protein RGL1
TrEMBL	A0A067K4N6	0.0	A0A067K4N6_JATCU; GRAS33 protein
STRING	cassava4.1_032725m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-61	RGA-like 1

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]