PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00791.10
Common NameJCGZ_12585
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 237aa    MW: 26876.3 Da    PI: 9.4138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00791.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++q G+g +W + ++++g++R++k+c++rw++yl
    Jcr4S00791.10 14 KGPWSPEEDARLKEYIEQNGTGgNWIALPSKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.82.1e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
    Jcr4S00791.10  69 GGFSEEEDNIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.302962IPR017930Myb domain
SuperFamilySSF466893.55E-2611109IPR009057Homeodomain-like
SMARTSM007172.9E-121364IPR001005SANT/Myb domain
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-241569IPR009057Homeodomain-like
CDDcd001672.04E-81662No hitNo description
PROSITE profilePS5129421.41163117IPR017930Myb domain
SMARTSM007179.9E-1167115IPR001005SANT/Myb domain
PfamPF002494.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2470117IPR009057Homeodomain-like
CDDcd001671.95E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDARLKEYIE QNGTGGNWIA LPSKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQSRRN SLKQEIKKEN QIFMASANDF INQEQTTNYW PELPSTSTTS IIPAVMNPTQ  180
DSQFLDQESL KSLLIKLGGR FSDNNDNNSV NMGSSTAASV DNGNYSLFQG LDVFFCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
1h8a_C2e-241411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347120.0KM034712.1 Jatropha curcas clone JcMYB092 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020537194.11e-164transcription factor RAX3 isoform X2
SwissprotQ9M2Y93e-87RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A067KJX51e-161A0A067KJX5_JATCU; MYB family protein
STRINGcassava4.1_030696m1e-121(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-80myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]